Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13j07
         (781 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0659 + 19282366-19282584,19282668-19282759,19282868-192829...    30   1.8  
08_02_1367 + 26432425-26432622,26434071-26434162,26434337-264344...    30   1.8  
09_04_0660 - 19286653-19287271,19287791-19287916,19288016-192882...    29   3.1  
03_02_0178 + 6195402-6199158,6199438-6200003                           29   4.1  

>09_04_0659 +
           19282366-19282584,19282668-19282759,19282868-19282958,
           19283393-19283512,19283638-19283730,19283795-19283933,
           19284060-19284141,19284229-19284361,19285024-19286010
          Length = 651

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +1

Query: 268 LWTKHRLNISCLQHIHNY 321
           LW KHR++++   H+HNY
Sbjct: 512 LWQKHRVDLAVYGHVHNY 529


>08_02_1367 +
           26432425-26432622,26434071-26434162,26434337-26434403,
           26434519-26434638,26434792-26435023,26435525-26435606,
           26435985-26436117,26436332-26436537,26436633-26436758,
           26437208-26437907
          Length = 651

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = +1

Query: 265 KLWTKHRLNISCLQHIHNY 321
           +LW +HR++++   H+HNY
Sbjct: 524 RLWQRHRVDVAFFGHVHNY 542


>09_04_0660 -
           19286653-19287271,19287791-19287916,19288016-19288221,
           19288417-19288549,19288632-19288713,19288906-19289035,
           19289187-19289279,19289391-19289510,19289594-19289660,
           19290079-19290137,19290719-19290943
          Length = 619

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = +1

Query: 265 KLWTKHRLNISCLQHIHNY 321
           +LW +HR++++   H+HNY
Sbjct: 491 RLWQRHRVDLAFYGHVHNY 509


>03_02_0178 + 6195402-6199158,6199438-6200003
          Length = 1440

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -1

Query: 367  YRYCGDYYCQNILRLNNCGCVVNMKCSSGASSKVLFGCSN 248
            Y  C +  C++IL +++C C V  + +   SS +   CSN
Sbjct: 1083 YLKCRNLSCKSILPVDDCDCKVCQRKTGFCSSCMCIVCSN 1122


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,709,992
Number of Sequences: 37544
Number of extensions: 307769
Number of successful extensions: 628
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 627
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)