Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13j07
         (781 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U61950-3|AAC24288.1|  469|Caenorhabditis elegans Hypothetical pr...    31   0.92 
AF077530-2|AAC26265.1|  436|Caenorhabditis elegans Hypothetical ...    28   6.5  

>U61950-3|AAC24288.1|  469|Caenorhabditis elegans Hypothetical
           protein C45E5.2 protein.
          Length = 469

 Score = 31.1 bits (67), Expect = 0.92
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = -1

Query: 289 SSGASSKVLFGCSNSIFFVSNLFLYVSKARFFYFDSVEFLIEHQL 155
           SS   S +  G  +S+  +S++ L V   R F    V+FL EHQL
Sbjct: 72  SSNVKSMISIGRWDSVTQLSSVLLNVKSRRMFIESIVDFLKEHQL 116


>AF077530-2|AAC26265.1|  436|Caenorhabditis elegans Hypothetical
           protein C40D2.2 protein.
          Length = 436

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 11/43 (25%), Positives = 22/43 (51%)
 Frame = -3

Query: 413 RIYSSTHSFSY*KPTISLLWRLLLSKYFTFK*LWMCCKHEMFK 285
           R+      +S  +   ++ WR+ + KY  F   ++CC  EM++
Sbjct: 159 RLVERRSDYSDLEEHFNIPWRMQIEKYNEFLATYLCCDKEMYE 201


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,230,177
Number of Sequences: 27780
Number of extensions: 335037
Number of successful extensions: 895
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 874
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 894
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1882685842
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)