Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13j07
(781 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF625896-1|ABR45903.1| 683|Apis mellifera hexamerin protein. 30 0.028
AY601637-1|AAT11850.1| 683|Apis mellifera hexamerin 70b protein. 30 0.028
DQ325101-1|ABD14115.1| 182|Apis mellifera complementary sex det... 25 0.60
DQ325100-1|ABD14114.1| 183|Apis mellifera complementary sex det... 25 0.60
DQ325099-1|ABD14113.1| 183|Apis mellifera complementary sex det... 25 0.60
DQ325098-1|ABD14112.1| 183|Apis mellifera complementary sex det... 25 0.60
DQ325097-1|ABD14111.1| 183|Apis mellifera complementary sex det... 25 0.60
DQ325096-1|ABD14110.1| 183|Apis mellifera complementary sex det... 25 0.60
DQ325095-1|ABD14109.1| 183|Apis mellifera complementary sex det... 25 0.60
DQ325102-1|ABD14116.1| 183|Apis mellifera complementary sex det... 25 0.79
AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex det... 25 1.0
DQ325081-1|ABD14095.1| 186|Apis mellifera complementary sex det... 24 1.8
DQ325080-1|ABD14094.1| 184|Apis mellifera complementary sex det... 24 1.8
DQ325079-1|ABD14093.1| 184|Apis mellifera complementary sex det... 24 1.8
DQ325078-1|ABD14092.1| 184|Apis mellifera complementary sex det... 24 1.8
AB267886-1|BAF46356.1| 567|Apis mellifera ecdysteroid receptor ... 23 3.2
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 23 4.2
AF069739-1|AAC63272.2| 690|Apis mellifera translation initiatio... 22 5.6
>EF625896-1|ABR45903.1| 683|Apis mellifera hexamerin protein.
Length = 683
Score = 29.9 bits (64), Expect = 0.028
Identities = 18/62 (29%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Frame = +1
Query: 211 THTKIGYLRKILNWNNQIKLWTKHRLNI--SCLQHIHNYLNVKYFDNNNLHNSDIVGF*Y 384
T +GY+ + ++ N +KL+TK LN+ + +Q + +NV+ + +L ++GF Y
Sbjct: 335 TAIDLGYV--VDSYGNHVKLYTKQGLNVLGNIVQGNGDSVNVQLYGQLDLLVRKVLGFGY 392
Query: 385 EN 390
E+
Sbjct: 393 ES 394
>AY601637-1|AAT11850.1| 683|Apis mellifera hexamerin 70b protein.
Length = 683
Score = 29.9 bits (64), Expect = 0.028
Identities = 18/62 (29%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Frame = +1
Query: 211 THTKIGYLRKILNWNNQIKLWTKHRLNI--SCLQHIHNYLNVKYFDNNNLHNSDIVGF*Y 384
T +GY+ + ++ N +KL+TK LN+ + +Q + +NV+ + +L ++GF Y
Sbjct: 335 TAIDLGYV--VDSYGNHVKLYTKQGLNVLGNIVQGNGDSVNVQLYGQLDLLVRKVLGFGY 392
Query: 385 EN 390
E+
Sbjct: 393 ES 394
>DQ325101-1|ABD14115.1| 182|Apis mellifera complementary sex
determiner protein.
Length = 182
Score = 25.4 bits (53), Expect = 0.60
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +1
Query: 292 ISCLQHIHNYLNVKYFDNNNLHNS 363
IS L + +NY N ++NNN +N+
Sbjct: 82 ISSLSNNYNYSNYNNYNNNNNYNN 105
>DQ325100-1|ABD14114.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 25.4 bits (53), Expect = 0.60
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +1
Query: 292 ISCLQHIHNYLNVKYFDNNNLHNS 363
IS L + +NY N ++NNN +N+
Sbjct: 82 ISSLSNNYNYSNYNNYNNNNNYNN 105
>DQ325099-1|ABD14113.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 25.4 bits (53), Expect = 0.60
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +1
Query: 292 ISCLQHIHNYLNVKYFDNNNLHNS 363
IS L + +NY N ++NNN +N+
Sbjct: 82 ISSLSNNYNYSNYNNYNNNNNYNN 105
>DQ325098-1|ABD14112.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 25.4 bits (53), Expect = 0.60
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +1
Query: 292 ISCLQHIHNYLNVKYFDNNNLHNS 363
IS L + +NY N ++NNN +N+
Sbjct: 82 ISSLSNNYNYSNYNNYNNNNNYNN 105
>DQ325097-1|ABD14111.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 25.4 bits (53), Expect = 0.60
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +1
Query: 292 ISCLQHIHNYLNVKYFDNNNLHNS 363
IS L + +NY N ++NNN +N+
Sbjct: 82 ISSLSNNYNYSNYNNYNNNNNYNN 105
>DQ325096-1|ABD14110.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 25.4 bits (53), Expect = 0.60
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +1
Query: 292 ISCLQHIHNYLNVKYFDNNNLHNS 363
IS L + +NY N ++NNN +N+
Sbjct: 82 ISSLSNNYNYSNYNNYNNNNNYNN 105
>DQ325095-1|ABD14109.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 25.4 bits (53), Expect = 0.60
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +1
Query: 292 ISCLQHIHNYLNVKYFDNNNLHNS 363
IS L + +NY N ++NNN +N+
Sbjct: 82 ISSLSNNYNYSNYNNYNNNNNYNN 105
>DQ325102-1|ABD14116.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 25.0 bits (52), Expect = 0.79
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +1
Query: 292 ISCLQHIHNYLNVKYFDNNNLHNS 363
+S L + +NY N ++NNN +N+
Sbjct: 82 VSSLSNNYNYSNYNNYNNNNNYNN 105
>AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex
determiner protein.
Length = 428
Score = 24.6 bits (51), Expect = 1.0
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 310 IHNYLNVKYFDNNNLHNSDIVGF*YEN 390
IHN N KY NNN +N++ Y N
Sbjct: 323 IHNNNNYKYNYNNNNYNNNNYNNNYNN 349
>DQ325081-1|ABD14095.1| 186|Apis mellifera complementary sex
determiner protein.
Length = 186
Score = 23.8 bits (49), Expect = 1.8
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +1
Query: 310 IHNYLNVKYFDNNNLHNSD 366
IHN N KY NNN +N++
Sbjct: 90 IHNNNNYKYNYNNNNYNNN 108
>DQ325080-1|ABD14094.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 23.8 bits (49), Expect = 1.8
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +1
Query: 310 IHNYLNVKYFDNNNLHNSD 366
IHN N KY NNN +N++
Sbjct: 90 IHNNNNYKYNYNNNNYNNN 108
>DQ325079-1|ABD14093.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 23.8 bits (49), Expect = 1.8
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +1
Query: 310 IHNYLNVKYFDNNNLHNSD 366
IHN N KY NNN +N++
Sbjct: 90 IHNNNNYKYNYNNNNYNNN 108
>DQ325078-1|ABD14092.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 23.8 bits (49), Expect = 1.8
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +1
Query: 310 IHNYLNVKYFDNNNLHNSD 366
IHN N KY NNN +N++
Sbjct: 90 IHNNNNYKYNYNNNNYNNN 108
>AB267886-1|BAF46356.1| 567|Apis mellifera ecdysteroid receptor A
isoform protein.
Length = 567
Score = 23.0 bits (47), Expect = 3.2
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -1
Query: 472 LTPNYISPHLFIRAYLPKTGASIHRLIH 389
LTP +SP+ +++ P+ IHRL++
Sbjct: 319 LTP--VSPYGYVKPISPEQEELIHRLVY 344
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 22.6 bits (46), Expect = 4.2
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +1
Query: 652 ILYFHLQHLMKHYLICV 702
++YFHLQ M ++LI V
Sbjct: 204 LVYFHLQRHMGNFLIQV 220
>AF069739-1|AAC63272.2| 690|Apis mellifera translation initiation
factor 2 protein.
Length = 690
Score = 22.2 bits (45), Expect = 5.6
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Frame = +1
Query: 262 IKLW---TKHRLNISCLQHIHNYLNVKYFDNNN 351
I++W T L S + I++ LNV YF N N
Sbjct: 56 IEIWDQMTVKELANSAKRDINDVLNVLYFINKN 88
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,035
Number of Sequences: 438
Number of extensions: 4532
Number of successful extensions: 21
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24518154
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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