Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13j05
         (798 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25B8.06c |||serine-tRNA ligase|Schizosaccharomyces pombe|chr...    27   4.1  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    27   4.1  
SPAC7D4.06c |alg3||dolichol-P-Man dependent alpha|Schizosaccharo...    27   4.1  
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha...    26   5.4  
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    26   7.2  
SPBC30B4.03c |||conserved protein |Schizosaccharomyces pombe|chr...    25   9.5  
SPBC23E6.03c |nta1||protein N-terminal amidase Nta1 |Schizosacch...    25   9.5  

>SPAC25B8.06c |||serine-tRNA ligase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 454

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = -1

Query: 741 SIHIS--RSVFSCLRCYSFVNQILVCVERNCVNR 646
           S H S  RS +  +  Y ++ Q    V+RNC+NR
Sbjct: 11  STHTSYLRSSWQAILNYKYIYQNAEAVQRNCINR 44


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -1

Query: 756 SDCCKSIHISRSVFSCLRCYSFVNQILVCVERNCVN 649
           S C  +I+ S S++SC  CY   +  L C+ + C N
Sbjct: 198 SVCTDTINPSTSIWSCGTCYHVFH--LSCIRKWCKN 231


>SPAC7D4.06c |alg3||dolichol-P-Man dependent
           alpha|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 406

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -2

Query: 743 NPFILAAAFFLVSVAIRLLIKS*YAWNEIASTEVHVLI 630
           +P++   A F   + I L +   YAWN   ST++  LI
Sbjct: 349 SPYLCYQASFPAPIVIGLWMLQEYAWNVFPSTKLSSLI 386


>SPBC660.15 |||mRNA cleavage factor complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -1

Query: 168 HERKIDNAKAMMRTANQVGTVSNDINEALESLKAEINLERTPD 40
           +E+K+++A     T+N   T  N+  E LE    E   ERT +
Sbjct: 20  NEKKVESASGNQETSNVTPTKENEGYEELEK-SGEAGAERTKE 61


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1687

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +3

Query: 291 RKQNIHSEPFYALLQPFAMKQLVHFASHLELL 386
           R   I+  PFY LL+  A + L HF     LL
Sbjct: 664 RAPTIYYTPFYNLLKKSAQQSLFHFVFDRPLL 695


>SPBC30B4.03c |||conserved protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 391

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -1

Query: 588 ASLLLRQEYNNAMKITHEGIKRFGPSAILSQINAS 484
           ASL L Q      +I H+G+K   PS+    IN+S
Sbjct: 175 ASLALSQSRPPQNQIQHDGVKSEDPSSESVNINSS 209


>SPBC23E6.03c |nta1||protein N-terminal amidase Nta1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 286

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -1

Query: 774 FLDTSVSDCCKSIHISRSVFSCLRCYSFV 688
           FL+   S+ C SI  ++ V    RCY+ +
Sbjct: 60  FLENVTSNHCPSIQFAQEVSEQYRCYTII 88


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,368,619
Number of Sequences: 5004
Number of extensions: 69916
Number of successful extensions: 192
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)