Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13j05
(798 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1616 + 28260204-28262555 32 0.46
01_06_1125 + 34683184-34684776 32 0.46
03_04_0151 - 17729023-17729372,17729441-17730623,17730723-177309... 31 0.80
04_04_0898 + 29220860-29221462,29221547-29222545 31 1.1
06_01_0078 - 628946-629524,629620-629684,629814-629935,630042-63... 31 1.4
02_03_0298 - 17428616-17428738,17428822-17428992,17429913-174300... 31 1.4
03_02_0295 + 7178921-7179451,7180083-7180448,7181316-7181450,718... 30 1.9
01_01_0733 - 5715719-5715785,5715908-5715966,5717844-5717884,571... 29 3.2
01_02_0051 - 10655867-10657057 29 4.3
03_05_0694 + 26844075-26844217,26844417-26844489,26844577-268447... 29 5.7
01_01_0732 - 5698863-5700413 29 5.7
03_06_0252 - 32656068-32656276,32656361-32656550,32656682-326567... 28 7.5
02_05_0464 - 29256887-29257765,29258455-29258538 28 7.5
>08_02_1616 + 28260204-28262555
Length = 783
Score = 32.3 bits (70), Expect = 0.46
Identities = 27/81 (33%), Positives = 32/81 (39%), Gaps = 3/81 (3%)
Frame = -1
Query: 372 GMQSEPAVSLQRAARAHKMV---PSGYSAFVLARIYNILGEKELAERWAAAAVKSEPLLS 202
G V AA AHK + P GY V R + G + A A VK P+L
Sbjct: 625 GATEAEVVEAATAANAHKFISALPEGYGTLVGERGVQLSGGQRQRIAIARALVKQAPILL 684
Query: 201 DGWAFLALLALHERKIDNAKA 139
A AL A ER + A A
Sbjct: 685 LDEATSALDAESERSVQEALA 705
>01_06_1125 + 34683184-34684776
Length = 530
Score = 32.3 bits (70), Expect = 0.46
Identities = 31/114 (27%), Positives = 47/114 (41%), Gaps = 3/114 (2%)
Frame = -1
Query: 465 GWDGQCESALEEADKAGAQPCPAILLRAALG---GMQSEPAVSLQRAARAHKMVPSGYSA 295
G DG+ + AD P A + A +G G ++ A + R
Sbjct: 58 GGDGEEDDPFSFADLQKLPPDVARDVEAVVGAAEGFHADAARARGLLERCGATASEPVVV 117
Query: 294 FVLARIYNILGEKELAERWAAAAVKSEPLLSDGWAFLALLALHERKIDNAKAMM 133
VL R+ N A RWA+A P + LA+LA H R+ D+A+A++
Sbjct: 118 AVLDRLRNSCAAAHAAFRWASAQPGYAPGRHACHSMLAILAKH-RRFDDARALL 170
>03_04_0151 -
17729023-17729372,17729441-17730623,17730723-17730953,
17730975-17731036,17732085-17732157,17737044-17737834,
17737932-17738004
Length = 920
Score = 31.5 bits (68), Expect = 0.80
Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Frame = -1
Query: 525 RFGPSAILSQINASCLTCSRGW---DGQCESALEEADKAGAQPCPAILLRAALGGMQSEP 355
R GPS L+ A TC W DGQ L D+ GA+P A+ + + L M+ EP
Sbjct: 106 RHGPSLPLATARALLATCV-DWLVTDGQRNVLLMRCDR-GARPALALAMASLLVYMEEEP 163
Query: 354 A 352
A
Sbjct: 164 A 164
>04_04_0898 + 29220860-29221462,29221547-29222545
Length = 533
Score = 31.1 bits (67), Expect = 1.1
Identities = 12/40 (30%), Positives = 25/40 (62%)
Frame = -2
Query: 440 RWKKRIKLVPNHVQLFFCEQL*VGCKVNQLFHCKGLQERI 321
RW K+ + +P+ V++ C+ + V + +L +CK L+ R+
Sbjct: 149 RWSKQQRTLPHIVEISDCDDVEVYVETLRLMYCKDLRRRL 188
>06_01_0078 -
628946-629524,629620-629684,629814-629935,630042-630129,
630508-630819,630908-632189,632296-632784
Length = 978
Score = 30.7 bits (66), Expect = 1.4
Identities = 22/63 (34%), Positives = 32/63 (50%)
Frame = -1
Query: 354 AVSLQRAARAHKMVPSGYSAFVLARIYNILGEKELAERWAAAAVKSEPLLSDGWAFLALL 175
A+SL +K+VP +L RIY LG E A+R K+ LLSD ++A+
Sbjct: 364 ALSLFSEMEQNKIVPDEVIYGILVRIYGKLGLYEDAQRMFEEIDKA-GLLSDEQTYVAMA 422
Query: 174 ALH 166
+H
Sbjct: 423 QVH 425
>02_03_0298 -
17428616-17428738,17428822-17428992,17429913-17430014,
17431654-17431764,17432142-17432228,17432551-17432588,
17432830-17432833,17433280-17433419,17434189-17434320,
17435289-17435354,17435966-17436013,17436055-17436160
Length = 375
Score = 30.7 bits (66), Expect = 1.4
Identities = 13/35 (37%), Positives = 24/35 (68%), Gaps = 3/35 (8%)
Frame = -1
Query: 621 KIAPDY---YYLQAASLLLRQEYNNAMKITHEGIK 526
K+ PD+ YY Q A+L+L ++Y +A + ++G+K
Sbjct: 315 KLRPDWPKAYYRQGAALMLLKDYESACETLYDGLK 349
>03_02_0295 +
7178921-7179451,7180083-7180448,7181316-7181450,
7181533-7181606,7181960-7181999,7182178-7182223,
7182398-7182477,7182585-7182760,7182848-7182973,
7183338-7183430,7184135-7184260,7184815-7184884,
7185262-7185344,7186216-7186329,7186884-7186983,
7187557-7187583
Length = 728
Score = 30.3 bits (65), Expect = 1.9
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = -1
Query: 351 VSLQRAARAHKMVPSGYSAFVLARIYNILGEKELAERWAAAAVKSEPL 208
+ + A H++ F+ + Y L +LA +W AAVK++PL
Sbjct: 332 IYFDKDAEDHEINIKAAICFLRGKAYEALDNCDLARQWYKAAVKADPL 379
>01_01_0733 -
5715719-5715785,5715908-5715966,5717844-5717884,
5718086-5718134,5718427-5718559,5719303-5719384,
5719990-5720472,5720612-5721024,5721260-5721419,
5721541-5721665,5721756-5721811,5721831-5721889,
5722069-5722180,5722952-5723032
Length = 639
Score = 29.5 bits (63), Expect = 3.2
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = -2
Query: 425 IKLVPNHVQLFFCEQL*VGCKVNQLFHCKGLQERIKWFRVDILLSF*LVF 276
+ L+P + F + L VG KV FH K I W+R+ I LS + F
Sbjct: 11 LDLIPQ-IHALFADPLRVGVKVFPFFHDKLRFTPIIWWRIKICLSLFVKF 59
>01_02_0051 - 10655867-10657057
Length = 396
Score = 29.1 bits (62), Expect = 4.3
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = -1
Query: 156 IDNAKAMMRTANQVGTVSNDINEALESLKAEINLERTPDYLARNV 22
+D K + T +G VSND+ E K +N+E+ +A+ V
Sbjct: 66 VDYEKIVRDTCRGIGFVSNDVGLDAEHCKVLVNIEQQSPDIAQGV 110
>03_05_0694 +
26844075-26844217,26844417-26844489,26844577-26844781,
26845516-26845655,26846858-26846983,26847455-26847622,
26848486-26848650,26849433-26849594,26849682-26849761,
26849975-26850038
Length = 441
Score = 28.7 bits (61), Expect = 5.7
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = -1
Query: 633 DYTIKIAPDY---YYLQAASLLLRQEYNNAMKITHEGIK 526
DY IK P++ YY + A+L+L +EY A G+K
Sbjct: 370 DYCIKSRPEWLKGYYRKGAALMLLKEYEKACDAFLAGLK 408
>01_01_0732 - 5698863-5700413
Length = 516
Score = 28.7 bits (61), Expect = 5.7
Identities = 21/66 (31%), Positives = 31/66 (46%)
Frame = -1
Query: 336 AARAHKMVPSGYSAFVLARIYNILGEKELAERWAAAAVKSEPLLSDGWAFLALLALHERK 157
AA AH +P A LAR + L ++ A+ AAA EP + D A + +E
Sbjct: 3 AAAAHHPLPHQQKAANLARTFTKLLRRKRADAVAAATAVGEPGVPDAAAASVVGDEYECS 62
Query: 156 IDNAKA 139
++ A A
Sbjct: 63 VEAAAA 68
>03_06_0252 -
32656068-32656276,32656361-32656550,32656682-32656780,
32656917-32657012,32657200-32658153,32658476-32658694,
32658911-32659120,32659241-32659503,32659605-32661281,
32663639-32663792
Length = 1356
Score = 28.3 bits (60), Expect = 7.5
Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
Frame = -1
Query: 591 AASLLLRQEYNNAMKITHEGI--KRFGPSAI---LSQINAS-CLTCSRGWDGQCESALEE 430
++ L L ++ T EGI R G A+ LS +AS C C+ G SAL +
Sbjct: 77 SSCLTLLGSLHHCAVTTSEGIGNSRDGFHAVQRRLSGFHASQCGFCTPGMCMSIYSALAK 136
Query: 429 ADKAGAQPCPAILLRAALGGMQSEPAVS 346
ADKA +P P + + ++E AVS
Sbjct: 137 ADKASGRPAPPTGF-SKITAAEAEKAVS 163
>02_05_0464 - 29256887-29257765,29258455-29258538
Length = 320
Score = 28.3 bits (60), Expect = 7.5
Identities = 23/77 (29%), Positives = 30/77 (38%), Gaps = 12/77 (15%)
Frame = -1
Query: 504 LSQINASCLTCSRGWD-----------GQC-ESALEEADKAGAQPCPAILLRAALGGMQS 361
LSQ C TC R W G C ++ KA A PA+ + AAL G
Sbjct: 93 LSQPRYFCKTCRRYWTKGGSLRNVPVGGGCRKNKRAPPKKAAAHAQPAVAVAAALQGRHM 152
Query: 360 EPAVSLQRAARAHKMVP 310
E + L + H + P
Sbjct: 153 ETGLHLSFSGMQHHLAP 169
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,849,401
Number of Sequences: 37544
Number of extensions: 453104
Number of successful extensions: 1165
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1165
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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