Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13j05
         (798 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ140356-1|AAZ53290.1| 2048|Homo sapiens Fanconi anemia compleme...    32   2.1  
BC042083-1|AAH42083.1|  774|Homo sapiens transmembrane and tetra...    32   2.1  
AK055962-1|BAB71057.1|  645|Homo sapiens UBUNIT (EC 2.4.1.-).  p...    32   2.1  
AB046816-1|BAB13422.1| 1151|Homo sapiens KIAA1596 protein protein.     32   2.1  
BC048270-1|AAH48270.2|  584|Homo sapiens TTC7B protein protein.        30   8.4  

>DQ140356-1|AAZ53290.1| 2048|Homo sapiens Fanconi anemia
            complementation group M protein.
          Length = 2048

 Score = 32.3 bits (70), Expect = 2.1
 Identities = 19/74 (25%), Positives = 38/74 (51%)
 Frame = -1

Query: 231  AAVKSEPLLSDGWAFLALLALHERKIDNAKAMMRTANQVGTVSNDINEALESLKAEINLE 52
            +A K+E LLS G++  +L  + ++ +    +   T N    +  +I +  +S K ++NL+
Sbjct: 1313 SAAKNEELLSPGYSQFSL-PVQKKVMSTPLSKSNTLNSFSKIRKEILKTPDSSKEKVNLQ 1371

Query: 51   RTPDYLARNVCYSK 10
            R  + L     YS+
Sbjct: 1372 RFKEALNSTFDYSE 1385


>BC042083-1|AAH42083.1|  774|Homo sapiens transmembrane and
           tetratricopeptide repeat containing 1 protein.
          Length = 774

 Score = 32.3 bits (70), Expect = 2.1
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = -1

Query: 357 PAVSLQRAARAHKMVPSGYSAFV-LARIYNILGEKELAERWAAAAVK 220
           P  ++    +A K+ PS + A V L R+Y  LGE  +AE W   A++
Sbjct: 524 PEKAVAHYQQAIKLSPSHHVAMVNLGRLYRSLGENSMAEEWYKRALQ 570


>AK055962-1|BAB71057.1|  645|Homo sapiens UBUNIT (EC 2.4.1.-).
           protein.
          Length = 645

 Score = 32.3 bits (70), Expect = 2.1
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = -1

Query: 357 PAVSLQRAARAHKMVPSGYSAFV-LARIYNILGEKELAERWAAAAVK 220
           P  ++    +A K+ PS + A V L R+Y  LGE  +AE W   A++
Sbjct: 395 PEKAVAHYQQAIKLSPSHHVAMVNLGRLYRSLGENSMAEEWYKRALQ 441


>AB046816-1|BAB13422.1| 1151|Homo sapiens KIAA1596 protein protein.
          Length = 1151

 Score = 32.3 bits (70), Expect = 2.1
 Identities = 19/74 (25%), Positives = 38/74 (51%)
 Frame = -1

Query: 231 AAVKSEPLLSDGWAFLALLALHERKIDNAKAMMRTANQVGTVSNDINEALESLKAEINLE 52
           +A K+E LLS G++  +L  + ++ +    +   T N    +  +I +  +S K ++NL+
Sbjct: 416 SAAKNEELLSPGYSQFSL-PVQKKVMSTPLSKSNTLNSFSKIRKEILKTPDSSKEKVNLQ 474

Query: 51  RTPDYLARNVCYSK 10
           R  + L     YS+
Sbjct: 475 RFKEALNSTFDYSE 488


>BC048270-1|AAH48270.2|  584|Homo sapiens TTC7B protein protein.
          Length = 584

 Score = 30.3 bits (65), Expect = 8.4
 Identities = 24/103 (23%), Positives = 47/103 (45%), Gaps = 2/103 (1%)
 Frame = -1

Query: 360 EPAVSLQRAARAHKMVPSGYSA-FVLARIYNILGEKELAERWAAAAVKSEPLLSDGWAFL 184
           +PA +      A  + P  ++  ++  +I  + G  + A RW   A+   P        L
Sbjct: 452 KPAEATACTQEAANLFPMSHNVLYMRGQIAELRGSMDEARRWYEEALAISPTHVKSMQRL 511

Query: 183 ALLALHERKIDNAKAMMRTANQVGTVSNDINEAL-ESLKAEIN 58
           AL+     +   A+ ++R A QV + ++++   L E L+A+ N
Sbjct: 512 ALILHQLGRYSLAEKILRDAVQVNSTAHEVWNGLGEVLQAQGN 554


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,256,883
Number of Sequences: 237096
Number of extensions: 2581400
Number of successful extensions: 9324
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9318
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9813323168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)