Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13j05
         (798 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY118586-1|AAM49955.1|  868|Drosophila melanogaster LD44919p pro...    32   0.79 
AE013599-2412|AAF57909.1|  868|Drosophila melanogaster CG8950-PA...    32   0.79 

>AY118586-1|AAM49955.1|  868|Drosophila melanogaster LD44919p
           protein.
          Length = 868

 Score = 32.3 bits (70), Expect = 0.79
 Identities = 33/135 (24%), Positives = 54/135 (40%)
 Frame = -1

Query: 612 PDYYYLQAASLLLRQEYNNAMKITHEGIKRFGPSAILSQINASCLTCSRGWDGQCESALE 433
           P + +L+ A  L +    N    ++E + +  P    ++   S L   +G   +   ALE
Sbjct: 437 PAFVWLRQAECLRQLNRTNEAIQSYEKVVQLAPFCYDARFTLSALLKQQGRHEEAVQALE 496

Query: 432 EADKAGAQPCPAILLRAALGGMQSEPAVSLQRAARAHKMVPSGYSAFVLARIYNILGEKE 253
           +  +A  QP  A LL         E  V LQ+  R  + +  GY+      I     E+ 
Sbjct: 497 QPGEAEGQPLIARLL--------YERCVMLQQIGRIEEFLDVGYALLSRHSIKLYNREEM 548

Query: 252 LAERWAAAAVKSEPL 208
           +A     +A  SE L
Sbjct: 549 MAAANGGSAYNSESL 563


>AE013599-2412|AAF57909.1|  868|Drosophila melanogaster CG8950-PA
           protein.
          Length = 868

 Score = 32.3 bits (70), Expect = 0.79
 Identities = 33/135 (24%), Positives = 54/135 (40%)
 Frame = -1

Query: 612 PDYYYLQAASLLLRQEYNNAMKITHEGIKRFGPSAILSQINASCLTCSRGWDGQCESALE 433
           P + +L+ A  L +    N    ++E + +  P    ++   S L   +G   +   ALE
Sbjct: 437 PAFVWLRQAECLRQLNRTNEAIQSYEKVVQLAPFCYDARFTLSALLKQQGRHEEAVQALE 496

Query: 432 EADKAGAQPCPAILLRAALGGMQSEPAVSLQRAARAHKMVPSGYSAFVLARIYNILGEKE 253
           +  +A  QP  A LL         E  V LQ+  R  + +  GY+      I     E+ 
Sbjct: 497 QPGEAEGQPLIARLL--------YERCVMLQQIGRIEEFLDVGYALLSRHSIKLYNREEM 548

Query: 252 LAERWAAAAVKSEPL 208
           +A     +A  SE L
Sbjct: 549 MAAANGGSAYNSESL 563


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,926,163
Number of Sequences: 53049
Number of extensions: 751544
Number of successful extensions: 1898
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1898
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3716337612
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)