Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13j05
         (798 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   5.7  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   5.7  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   5.7  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   5.7  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   5.7  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   7.6  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   7.6  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = -3

Query: 613 PGLLLLASSFIT 578
           PG++L+ SSFIT
Sbjct: 310 PGIILVTSSFIT 321


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = -3

Query: 613 PGLLLLASSFIT 578
           PG++L+ SSFIT
Sbjct: 279 PGIILVTSSFIT 290


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = -3

Query: 613 PGLLLLASSFIT 578
           PG++L+ SSFIT
Sbjct: 330 PGIILVTSSFIT 341


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = -3

Query: 613 PGLLLLASSFIT 578
           PG++L+ SSFIT
Sbjct: 279 PGIILVTSSFIT 290


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 7/28 (25%), Positives = 13/28 (46%)
 Frame = +1

Query: 379 SCSQKNSWTWLGTSFIRFFQRTFTLPIP 462
           S  ++  W W     I+  ++ + LP P
Sbjct: 833 SYGERPYWNWSNQDVIKSIEKGYRLPAP 860


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +1

Query: 211 RFRFDCSGRPA 243
           RFR++C GR A
Sbjct: 59  RFRYECEGRSA 69


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +1

Query: 211 RFRFDCSGRPA 243
           RFR++C GR A
Sbjct: 59  RFRYECEGRSA 69


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 222,299
Number of Sequences: 438
Number of extensions: 5037
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25246416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)