Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13j04
         (799 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1012 - 26893828-26894052,26894137-26894355,26894513-268946...    30   2.5  
06_03_1382 - 29758759-29758806,29758888-29758943,29759901-297600...    29   4.3  

>06_03_1012 -
           26893828-26894052,26894137-26894355,26894513-26894652,
           26894790-26895198
          Length = 330

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = +3

Query: 612 SPINKKQLLAASKRSSLRQF-SVPKRATPAGRSSSARNTLLAQDAPNINRE 761
           SP+N + LL   + + LR   S+P  A  +  SSS+R  L A   P+++ +
Sbjct: 9   SPLNPQFLLLPRQSARLRVLLSIPVSAMSSSSSSSSRGALAAAAVPSLSAD 59


>06_03_1382 -
           29758759-29758806,29758888-29758943,29759901-29760000,
           29760107-29760220,29760807-29760854,29760959-29761021,
           29761237-29761439,29761518-29761578,29761685-29761790,
           29761920-29761987,29762344-29762418,29762507-29762589,
           29762788-29762953
          Length = 396

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 497 DLLYDGFVHRLQTYFLHGGFSG 562
           D+L+DG  HR++ + LH  F G
Sbjct: 323 DILFDGQTHRIKKFVLHTNFPG 344


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,119,061
Number of Sequences: 37544
Number of extensions: 436975
Number of successful extensions: 1156
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1156
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)