Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13j02
         (305 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    23   7.7  
SPAC2F3.12c |||conserved eukaryotic protein|Schizosaccharomyces ...    23   7.7  
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    23   7.7  
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch...    23   7.7  
SPAC3H1.08c |||DUF1640 family protein|Schizosaccharomyces pombe|...    23   7.7  
SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor E|S...    23   7.7  

>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1666

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -2

Query: 97   ISASAVGNSLSLADAVLANNTNIHQNF 17
            I A  +GN+L L    +ANN +   +F
Sbjct: 1628 IGAGILGNTLMLTQGPMANNNDQFDSF 1654


>SPAC2F3.12c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 279

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -3

Query: 111 KCRILSVLLQWVIRCHWPTPF 49
           +C+I+   L+ + + HW T F
Sbjct: 167 RCKIIDSHLEKIAKVHWETKF 187


>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 589

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 74  FVVTGRRRFGKQHEH 30
           F + G+R FG +HEH
Sbjct: 188 FKMRGKRGFGMRHEH 202


>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 764

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 71  RITHCRSTDNIRHLHVSN 124
           R T C  TD I+HL ++N
Sbjct: 499 RQTSCYITDTIQHLDINN 516


>SPAC3H1.08c |||DUF1640 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 211

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 64  LADAVLANNTNIHQN 20
           + DA  + NTNIH+N
Sbjct: 153 MKDAATSRNTNIHEN 167


>SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor
           E|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 511

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 6/27 (22%), Positives = 17/27 (62%)
 Frame = +2

Query: 41  VCQNGVGQ*QRITHCRSTDNIRHLHVS 121
           + +N +   + + H R+ +N++HL ++
Sbjct: 297 ISENNIRDIRSLDHLRTLENLKHLRIT 323


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,225,672
Number of Sequences: 5004
Number of extensions: 18842
Number of successful extensions: 35
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 77794588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)