Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13j02
         (305 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0637 - 12491706-12492575,12492580-12492657                       28   1.3  
06_01_0083 - 659510-661267,661577-662384,662700-663646                 27   3.8  
10_08_0253 - 16196275-16196307,16196425-16196550,16196643-161967...    25   8.9  

>02_02_0637 - 12491706-12492575,12492580-12492657
          Length = 315

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 72  ELPTAEALIISGICMSATCSTGCS 143
           +LPT+  LI+  + + +TC  GCS
Sbjct: 67  DLPTSALLILYNLLLCSTCRAGCS 90


>06_01_0083 - 659510-661267,661577-662384,662700-663646
          Length = 1170

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +1

Query: 25  GGCSCCLPKRRRPVTT 72
           G CSCC P+RR+  T+
Sbjct: 751 GCCSCCFPQRRKVKTS 766


>10_08_0253 -
           16196275-16196307,16196425-16196550,16196643-16196741,
           16196822-16197001,16197090-16197371,16197471-16199141,
           16199257-16199463,16199566-16199700,16199792-16200082,
           16200403-16200621,16200876-16201034,16201120-16201181,
           16201257-16201383,16201460-16201693,16201777-16202003,
           16202163-16202257,16202341-16202468,16202574-16202594,
           16202765-16202921,16203007-16203075,16203228-16203341,
           16203415-16203491,16203576-16203688,16204432-16204507,
           16204592-16204756,16204825-16204952,16205049-16205130,
           16205426-16205548,16205633-16205860,16205933-16206034,
           16206144-16206341,16206581-16206760,16206868-16207020,
           16207690-16207797,16208201-16208355,16208786-16208912,
           16209825-16209914,16209986-16210127,16210303-16210379,
           16210467-16210582,16210638-16210773,16211130-16211198,
           16211279-16211361,16211655-16211720,16211788-16211974,
           16212054-16213547,16213635-16214165,16214234-16214363,
           16214407-16215878,16216359-16216364,16216750-16217055,
           16217364-16217468,16217577-16217772,16217862-16217929,
           16218853-16220631,16221026-16221151,16221604-16221780,
           16221997-16222128,16223461-16223498,16223710-16223788,
           16224175-16224284,16224787-16224935,16225027-16225197,
           16225281-16225552,16226355-16226442,16227942-16228369
          Length = 5157

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 297 MYILKDAPRKLFRAILLLNRVFYEMWD 217
           +++L DA +  +R + L  RVF E WD
Sbjct: 174 LHLLLDATQVSYRFLELEPRVFCEQWD 200


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,774,121
Number of Sequences: 37544
Number of extensions: 118518
Number of successful extensions: 307
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 304
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 307
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 363831720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)