Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13j02
         (305 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT025844-1|ABF85744.1|  487|Drosophila melanogaster IP12417p pro...    27   4.5  
AY094661-1|AAM11014.1|  187|Drosophila melanogaster AT26093p pro...    27   4.5  
AE014297-578|AAF54048.1|  187|Drosophila melanogaster CG1288-PA ...    27   4.5  
AE014296-891|AAF47928.1|  487|Drosophila melanogaster CG32238-PA...    27   4.5  
AE013599-3452|AAF46893.1|  218|Drosophila melanogaster CG13519-P...    27   4.5  
AE014298-1939|AAF48301.1|  278|Drosophila melanogaster CG11162-P...    27   6.0  

>BT025844-1|ABF85744.1|  487|Drosophila melanogaster IP12417p
           protein.
          Length = 487

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -2

Query: 136 PVEHVADMQMPDIISASAVGNSLSLADAVLANNTNIHQN 20
           P + V D++   + SA A+GN   L D  LA     HQN
Sbjct: 432 PPDGVPDVRWNKVPSADALGNFELLIDEELAAQDEQHQN 470


>AY094661-1|AAM11014.1|  187|Drosophila melanogaster AT26093p
           protein.
          Length = 187

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 74  FVVTGRRRFGKQHEHPPKFHHYRQ 3
           FVV    R  +QH+H P  HH+ +
Sbjct: 49  FVVEDVSRLQQQHQHQPYHHHHHR 72


>AE014297-578|AAF54048.1|  187|Drosophila melanogaster CG1288-PA
           protein.
          Length = 187

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 74  FVVTGRRRFGKQHEHPPKFHHYRQ 3
           FVV    R  +QH+H P  HH+ +
Sbjct: 49  FVVEDVSRLQQQHQHQPYHHHHHR 72


>AE014296-891|AAF47928.1|  487|Drosophila melanogaster CG32238-PA
           protein.
          Length = 487

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -2

Query: 136 PVEHVADMQMPDIISASAVGNSLSLADAVLANNTNIHQN 20
           P + V D++   + SA A+GN   L D  LA     HQN
Sbjct: 432 PPDGVPDVRWNKVPSADALGNFELLIDEELAAQDEQHQN 470


>AE013599-3452|AAF46893.1|  218|Drosophila melanogaster CG13519-PA
           protein.
          Length = 218

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +3

Query: 24  WWMFVLFAKTASASDNELPTAEALIISGICMSATCST 134
           +W F++    + A DNE  TA A I SG      C+T
Sbjct: 7   YWTFLILVAVSKAQDNEETTAVA-ISSGDLTEDKCNT 42


>AE014298-1939|AAF48301.1|  278|Drosophila melanogaster CG11162-PA
           protein.
          Length = 278

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -2

Query: 139 HPVEHVADMQMPDIISASAVGNSLSLADAVLA 44
           HPVEHV    +P   S + +G  ++LA  + A
Sbjct: 177 HPVEHVLANLLPVATSIAILGTHVALAYVIFA 208


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,430,688
Number of Sequences: 53049
Number of extensions: 220964
Number of successful extensions: 580
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 580
length of database: 24,988,368
effective HSP length: 74
effective length of database: 21,062,742
effective search space used: 568694034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)