Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13j02
         (305 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79696-1|CAB01972.1| 1584|Caenorhabditis elegans Hypothetical pr...    27   2.0  
Z80217-8|CAB02294.1|  207|Caenorhabditis elegans Hypothetical pr...    27   3.4  
U58732-6|AAB00596.3|  333|Caenorhabditis elegans Serpentine rece...    26   6.0  
U58732-5|AAW88398.1|  337|Caenorhabditis elegans Serpentine rece...    26   6.0  

>Z79696-1|CAB01972.1| 1584|Caenorhabditis elegans Hypothetical
           protein F54F3.1 protein.
          Length = 1584

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 128 TCC*HANAGYYQCFCSG*FVVTG 60
           +C  H + GYYQC C+  +V  G
Sbjct: 910 SCAYHHSLGYYQCACTEPYVGNG 932


>Z80217-8|CAB02294.1|  207|Caenorhabditis elegans Hypothetical
           protein F37B1.8 protein.
          Length = 207

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 94  SASAVGNSLSLADAVLANNTNIHQNF 17
           S   +GNS++ AD V+ NN    +NF
Sbjct: 146 SGFLIGNSITYADLVVVNNLETLRNF 171


>U58732-6|AAB00596.3|  333|Caenorhabditis elegans Serpentine
           receptor, class v protein5, isoform a protein.
          Length = 333

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = +3

Query: 21  FWWMFVLFAKTASASDNELPTAEALIISGICMSATC 128
           F + F++ + +   +++ L TA    + GIC   TC
Sbjct: 152 FTYWFMITSSSIRLTNDSLSTALVAYVDGICCLGTC 187


>U58732-5|AAW88398.1|  337|Caenorhabditis elegans Serpentine
           receptor, class v protein5, isoform b protein.
          Length = 337

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = +3

Query: 21  FWWMFVLFAKTASASDNELPTAEALIISGICMSATC 128
           F + F++ + +   +++ L TA    + GIC   TC
Sbjct: 156 FTYWFMITSSSIRLTNDSLSTALVAYVDGICCLGTC 191


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,953,517
Number of Sequences: 27780
Number of extensions: 114236
Number of successful extensions: 260
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 257
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 260
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 323034540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)