Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13j02
         (305 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    25   0.21 
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          22   1.5  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      22   1.5  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    22   1.5  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    22   1.5  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    22   1.5  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   3.4  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   4.5  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      21   4.5  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    20   7.9  

>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 25.0 bits (52), Expect = 0.21
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -2

Query: 58  DAVLANNTNIHQNFIIIV 5
           D +L NNT IHQ  III+
Sbjct: 131 DDILGNNTVIHQPRIIII 148


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 22.2 bits (45), Expect = 1.5
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +1

Query: 43  LPKRRRPVTTNYPLQKH 93
           LP  +RP+ +N+P+ K+
Sbjct: 305 LPFPQRPIWSNFPIYKY 321


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 22.2 bits (45), Expect = 1.5
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +1

Query: 43  LPKRRRPVTTNYPLQKH 93
           LP  +RP+ +N+P+ K+
Sbjct: 305 LPFPQRPIWSNFPIYKY 321


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 22.2 bits (45), Expect = 1.5
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = -2

Query: 121 ADMQMPDIISASAVGNSLSLADAVLANNTNIHQNFIII 8
           A + +  ++ A+ +GN+L +          I QNF I+
Sbjct: 39  ASLTLGFLVLATVLGNALVILSVFTYRPLRIVQNFFIV 76


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 22.2 bits (45), Expect = 1.5
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = -2

Query: 121 ADMQMPDIISASAVGNSLSLADAVLANNTNIHQNFIII 8
           A + +  ++ A+ +GN+L +          I QNF I+
Sbjct: 39  ASLTLGFLVLATVLGNALVILSVFTYRPLRIVQNFFIV 76


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 22.2 bits (45), Expect = 1.5
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = -2

Query: 121 ADMQMPDIISASAVGNSLSLADAVLANNTNIHQNFIII 8
           A + +  ++ A+ +GN+L +          I QNF I+
Sbjct: 39  ASLTLGFLVLATVLGNALVILSVFTYRPLRIVQNFFIV 76


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.0 bits (42), Expect = 3.4
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = -3

Query: 117 TCKCRILSVLLQWV 76
           +C+C+ L  L  WV
Sbjct: 927 SCRCKFLQELSSWV 940


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 20.6 bits (41), Expect = 4.5
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +2

Query: 233 NTRFNNKIARNNFRGASF 286
           +T  NN +A  NF+G  +
Sbjct: 469 DTLINNAVAVENFKGGMY 486


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 20.6 bits (41), Expect = 4.5
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +2

Query: 233 NTRFNNKIARNNFRGASF 286
           +T  NN +A  NF+G  +
Sbjct: 469 DTLINNAVAVENFKGGMY 486


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 19.8 bits (39), Expect = 7.9
 Identities = 7/21 (33%), Positives = 10/21 (47%)
 Frame = +2

Query: 233 NTRFNNKIARNNFRGASFKMY 295
           N  +NN    NN+     K+Y
Sbjct: 335 NNNYNNNNYNNNYNNNCKKLY 355


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,500
Number of Sequences: 438
Number of extensions: 1293
Number of successful extensions: 13
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6493812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)