Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13j01
         (532 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   0.43 
SPAC17G8.07 |||YEATS family protein|Schizosaccharomyces pombe|ch...    27   1.3  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   2.3  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    27   2.3  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   2.3  
SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyc...    25   5.3  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    25   7.0  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.1 bits (62), Expect = 0.43
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = -1

Query: 523 PFPKPIVGKPCEPPTPSGAPSAQRAPVXP 437
           P P PI+G P  PP P G   A   P  P
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780


>SPAC17G8.07 |||YEATS family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 217

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -1

Query: 469 APSAQRAPVXPYXHCDXHSYSPRVEQYK 386
           AP A    +  Y H   H Y PR+E+ K
Sbjct: 99  APEAHEKALTFYHHLKLHPYGPRMEEMK 126


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -1

Query: 523  PFPKPIVGKPCEPPTPSGAPSAQRAPV 443
            P P  +   P  PP P+G PSA   P+
Sbjct: 1709 PPPMSVPPPPSAPPMPAGPPSAPPPPL 1735


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 12/40 (30%), Positives = 17/40 (42%)
 Frame = -1

Query: 490 EPPTPSGAPSAQRAPVXPYXHCDXHSYSPRVEQYKQLLEK 371
           +PP P   PSA R         + H+Y    E    LL++
Sbjct: 5   DPPAPLSQPSASRLQKYLLESAEKHAYDSNEESKTHLLQE 44


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 13/20 (65%), Positives = 13/20 (65%)
 Frame = -1

Query: 523  PFPKPIVGKPCEPPTPSGAP 464
            P PKP VG P  PP PS AP
Sbjct: 1199 PVPKPSVGVPPVPP-PSTAP 1217



 Score = 26.2 bits (55), Expect = 3.0
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = -1

Query: 523  PFPKPIVGKPCEPPTPSGAPSAQRAPV 443
            P PKP  G P  PP PS AP   +  V
Sbjct: 1180 PVPKPAAGVPPVPP-PSEAPPVPKPSV 1205


>SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 573

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -1

Query: 400 VEQYKQLLEKEQKLCQDXEQXRKQMVSVTXDILDHPCDD 284
           V Q+ Q L + Q    D  +    ++S+T D L HP D+
Sbjct: 232 VSQWIQRLSQLQGQKIDNSESLPDILSITLDNLSHPTDE 270


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 11/27 (40%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
 Frame = -1

Query: 523 PFPKPI-VGKPCEPPTPSGAPSAQRAP 446
           P   P+  G P  PP P  AP+   AP
Sbjct: 454 PIAPPLPAGMPAAPPLPPAAPAPPPAP 480


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,608,716
Number of Sequences: 5004
Number of extensions: 22395
Number of successful extensions: 60
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)