Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13j01
         (532 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0510 + 25039408-25039455,25040627-25040641,25040832-250409...    31   0.76 
03_04_0204 - 18444903-18445054,18445445-18445676,18445765-184458...    30   1.3  
08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,336...    29   2.3  
01_05_0767 - 25034577-25034716,25035231-25035300,25035960-25036271     29   3.1  
12_02_0304 + 17112677-17113195                                         28   5.4  
11_05_0067 + 18781531-18782223                                         27   7.1  
12_02_1041 + 25626210-25626595,25628607-25630542,25630572-25630613     27   9.4  
12_02_0643 - 21461123-21461902                                         27   9.4  

>03_05_0510 +
           25039408-25039455,25040627-25040641,25040832-25040991,
           25041116-25041192,25041324-25042528,25042537-25042621,
           25043068-25043130,25043207-25043263,25043299-25043361,
           25043560-25043643,25043730-25044320,25044535-25044663
          Length = 858

 Score = 30.7 bits (66), Expect = 0.76
 Identities = 13/42 (30%), Positives = 26/42 (61%)
 Frame = -1

Query: 415 SYSPRVEQYKQLLEKEQKLCQDXEQXRKQMVSVTXDILDHPC 290
           SYS R E+Y++L++  +KL +     ++QM+ V+  +  + C
Sbjct: 525 SYSSRKEKYQKLMKANEKLEKQVLSMKQQMIHVSDHVRLYAC 566


>03_04_0204 -
           18444903-18445054,18445445-18445676,18445765-18445836,
           18446201-18446347,18446559-18446614,18446727-18446832,
           18446938-18447025,18447112-18447230,18448975-18449580,
           18449803-18449898,18450232-18450422,18453287-18453416,
           18453531-18453566
          Length = 676

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = -1

Query: 370 EQKLCQDXEQXRKQMVSVTXDILDHPCDDLDSKMTTMYQXTYK 242
           ++KL +D E+ RKQ       ++D   D  +S+ T+ +  TYK
Sbjct: 510 DKKLAEDAERIRKQSDGDDNAVVDSEKDKNESRSTSKHAKTYK 552


>08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,
            33643-34147,34250-34358,34436-34548,34619-34806,
            35481-36129,36169-36691,36760-36911,37042-37141,
            37301-37416
          Length = 1530

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 12/29 (41%), Positives = 13/29 (44%)
 Frame = -1

Query: 523  PFPKPIVGKPCEPPTPSGAPSAQRAPVXP 437
            P P P    PC+PP P   P A   P  P
Sbjct: 1146 PPPLPSDSPPCQPPLPPSPPPATPPPPPP 1174


>01_05_0767 - 25034577-25034716,25035231-25035300,25035960-25036271
          Length = 173

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -1

Query: 133 DXXHFSENPXKVRPXIHPPAPIHTGVTPQSIK 38
           D  + SE+P    P I PP PIH    P + K
Sbjct: 140 DSVNRSEHPKASLPVIRPPKPIHAYALPAASK 171


>12_02_0304 + 17112677-17113195
          Length = 172

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -1

Query: 514 KPIVGKPCEPPTPSGAPSAQRAPVXPYXHC 425
           +P+V  P +PPTPSG     R  V     C
Sbjct: 72  QPLVVAPTQPPTPSGGSQCLRENVIALNVC 101


>11_05_0067 + 18781531-18782223
          Length = 230

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = -1

Query: 400 VEQYKQLLEKEQKLCQDXEQXRKQMVSVTXDIL 302
           ++++ QLLE+   LC D  + R+ + S+  D+L
Sbjct: 79  LDKFSQLLERYDVLCDDRNKLRELVGSIYADML 111


>12_02_1041 + 25626210-25626595,25628607-25630542,25630572-25630613
          Length = 787

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -1

Query: 517 PKPIVGKPCEPPTPSGAPSAQRAPV 443
           P P +  P + P P GAPS  R P+
Sbjct: 518 PLPSLPPPAKMPPPPGAPSHSRLPL 542


>12_02_0643 - 21461123-21461902
          Length = 259

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = -1

Query: 517 PKPIVGKPCEPPTPSGAPSAQRAPVXPYXHC 425
           P P+ G+P  PP P   P     P  PY  C
Sbjct: 212 PSPLRGRPRTPPPP--RPRPPTTPPRPYVGC 240


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,295,485
Number of Sequences: 37544
Number of extensions: 176942
Number of successful extensions: 921
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 910
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)