Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13j01
         (532 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY119070-1|AAM50930.1|  157|Drosophila melanogaster LP08443p pro...    29   3.0  
AE013599-3681|AAF47057.1|  157|Drosophila melanogaster CG11300-P...    29   3.0  
AE014298-1420|AAF46562.2|  376|Drosophila melanogaster CG2962-PA...    29   3.9  
AY075436-1|AAL68251.2|  231|Drosophila melanogaster LP09717p pro...    28   6.9  

>AY119070-1|AAM50930.1|  157|Drosophila melanogaster LP08443p
           protein.
          Length = 157

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 18/63 (28%), Positives = 30/63 (47%)
 Frame = -1

Query: 517 PKPIVGKPCEPPTPSGAPSAQRAPVXPYXHCDXHSYSPRVEQYKQLLEKEQKLCQDXEQX 338
           P P  G P  P TP  AP++  +P  P    D  S S   ++  +L  + ++L +   + 
Sbjct: 72  PTPATGTPSSPATPD-APASSTSPATPTSPSDSGSSSS--QEVIRLRRRLRRLRRQLRRE 128

Query: 337 RKQ 329
           R+Q
Sbjct: 129 RRQ 131


>AE013599-3681|AAF47057.1|  157|Drosophila melanogaster CG11300-PA
           protein.
          Length = 157

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 18/63 (28%), Positives = 30/63 (47%)
 Frame = -1

Query: 517 PKPIVGKPCEPPTPSGAPSAQRAPVXPYXHCDXHSYSPRVEQYKQLLEKEQKLCQDXEQX 338
           P P  G P  P TP  AP++  +P  P    D  S S   ++  +L  + ++L +   + 
Sbjct: 72  PTPATGTPSSPATPD-APASSTSPATPTSPSDSGSSSS--QEVIRLRRRLRRLRRQLRRE 128

Query: 337 RKQ 329
           R+Q
Sbjct: 129 RRQ 131


>AE014298-1420|AAF46562.2|  376|Drosophila melanogaster CG2962-PA
           protein.
          Length = 376

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 14/43 (32%), Positives = 18/43 (41%)
 Frame = -1

Query: 532 YQWPFPKPIVGKPCEPPTPSGAPSAQRAPVXPYXHCDXHSYSP 404
           Y  P P P++  P   P P  AP  Q  P+    H    +Y P
Sbjct: 334 YAAPAPAPVLSVPHPAPAPVFAPEEQSLPI---GHAPAQTYGP 373


>AY075436-1|AAL68251.2|  231|Drosophila melanogaster LP09717p
           protein.
          Length = 231

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 493 CEPPTPSGAPSAQRAPVXPYXH 428
           C P TP+ +P A+  PV P+ H
Sbjct: 202 CAPVTPTESPCAEVTPVAPWLH 223


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,358,716
Number of Sequences: 53049
Number of extensions: 288871
Number of successful extensions: 1363
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1350
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1991467008
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)