Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13j01
(532 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46381-1|CAA86513.1| 437|Caenorhabditis elegans Hypothetical pr... 29 1.6
AF082012-1|AAD03024.1| 437|Caenorhabditis elegans UDP-N-acetylg... 29 1.6
AF039037-7|AAC48231.3| 441|Caenorhabditis elegans Nuclear hormo... 29 1.6
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 28 4.8
Z81135-4|CAB03457.1| 500|Caenorhabditis elegans Hypothetical pr... 27 6.3
AY305835-1|AAR11980.1| 618|Caenorhabditis elegans nuclear recep... 27 6.3
AL032634-4|CAA21599.1| 500|Caenorhabditis elegans Hypothetical ... 27 6.3
AL023835-4|CAD56254.1| 564|Caenorhabditis elegans Hypothetical ... 27 6.3
AL023835-3|CAD56253.1| 566|Caenorhabditis elegans Hypothetical ... 27 6.3
AL023835-1|CAA19486.1| 164|Caenorhabditis elegans Hypothetical ... 27 6.3
AF273820-1|AAG15169.1| 624|Caenorhabditis elegans nuclear recep... 27 6.3
AF273819-1|AAG15168.1| 619|Caenorhabditis elegans nuclear recep... 27 6.3
AF047660-6|AAV34786.1| 659|Caenorhabditis elegans Nuclear hormo... 27 6.3
AF047660-5|AAM54168.1| 733|Caenorhabditis elegans Nuclear hormo... 27 6.3
Z50029-8|CAA90342.2| 668|Caenorhabditis elegans Hypothetical pr... 27 8.4
U64834-2|AAB04823.2| 1145|Caenorhabditis elegans Hypothetical pr... 27 8.4
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 27 8.4
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 27 8.4
U23515-9|AAP82644.1| 360|Caenorhabditis elegans Hypothetical pr... 27 8.4
U23515-8|AAP82645.1| 362|Caenorhabditis elegans Hypothetical pr... 27 8.4
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 27 8.4
AF016448-12|AAB65959.1| 316|Caenorhabditis elegans Hypothetical... 27 8.4
>Z46381-1|CAA86513.1| 437|Caenorhabditis elegans Hypothetical
protein M01F1.1 protein.
Length = 437
Score = 29.5 bits (63), Expect = 1.6
Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 9/55 (16%)
Frame = -1
Query: 526 WPFPKPIVGKPCEPPTPSGA---------PSAQRAPVXPYXHCDXHSYSPRVEQY 389
WP P P++ C P A PSAQ+ P+ CD S VE++
Sbjct: 85 WPHPIPVIVFSCNRPDSVRAHVEKLIMYRPSAQQFPITVSQDCDNESVKKEVEKF 139
>AF082012-1|AAD03024.1| 437|Caenorhabditis elegans
UDP-N-acetylglucosamine:a-3-D-mannosideb-1,
2-N-acetylglucosaminyltransferase I protein.
Length = 437
Score = 29.5 bits (63), Expect = 1.6
Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 9/55 (16%)
Frame = -1
Query: 526 WPFPKPIVGKPCEPPTPSGA---------PSAQRAPVXPYXHCDXHSYSPRVEQY 389
WP P P++ C P A PSAQ+ P+ CD S VE++
Sbjct: 85 WPHPIPVIVFSCNRPDSVRAHVEKLIMYRPSAQQFPITVSQDCDNESVKKEVEKF 139
>AF039037-7|AAC48231.3| 441|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 204 protein.
Length = 441
Score = 29.5 bits (63), Expect = 1.6
Identities = 18/64 (28%), Positives = 30/64 (46%)
Frame = -1
Query: 418 HSYSPRVEQYKQLLEKEQKLCQDXEQXRKQMVSVTXDILDHPCDDLDSKMTTMYQXTYKK 239
HS + +E+ KE + ++ K + + D+++H LD K+TT TY
Sbjct: 131 HSENQPLEENSSEFGKEIVVLPRIKEPPKSIEAQVTDLINHLMH-LDLKITTFRDCTYNP 189
Query: 238 RSFP 227
SFP
Sbjct: 190 MSFP 193
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 27.9 bits (59), Expect = 4.8
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -1
Query: 523 PFPKPIVGKPCEPPTPSGAPSAQRAP 446
P P P+ G P PP PSG A + P
Sbjct: 105 PPPPPMFGAPPPPPPPSGLGVAPQPP 130
>Z81135-4|CAB03457.1| 500|Caenorhabditis elegans Hypothetical
protein W01G7.5 protein.
Length = 500
Score = 27.5 bits (58), Expect = 6.3
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -1
Query: 514 KPIVGKPCEPPTPSGAPSAQRAPVXP 437
+P V KP PTP AP A ++P P
Sbjct: 51 RPTVAKPAPKPTPKSAP-APKSPKSP 75
>AY305835-1|AAR11980.1| 618|Caenorhabditis elegans nuclear receptor
NHR-66 protein.
Length = 618
Score = 27.5 bits (58), Expect = 6.3
Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Frame = -1
Query: 487 PPTPSGAPSAQRAPVXPYXHCDXHSYSPRVEQYKQLLEKEQKLCQDXEQXRK-QMVSVTX 311
PP+P + + AP+ P H R +Q++Q ++Q+ Q RK M ++
Sbjct: 29 PPSPLTSLPQKPAPLMPSGHVTTVDQQNR-QQHQQQQRQQQQAQQQNSMARKYSMDTIQH 87
Query: 310 DILDHP 293
+ HP
Sbjct: 88 HTMQHP 93
>AL032634-4|CAA21599.1| 500|Caenorhabditis elegans Hypothetical
protein W01G7.5 protein.
Length = 500
Score = 27.5 bits (58), Expect = 6.3
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -1
Query: 514 KPIVGKPCEPPTPSGAPSAQRAPVXP 437
+P V KP PTP AP A ++P P
Sbjct: 51 RPTVAKPAPKPTPKSAP-APKSPKSP 75
>AL023835-4|CAD56254.1| 564|Caenorhabditis elegans Hypothetical
protein Y37A1B.2d protein.
Length = 564
Score = 27.5 bits (58), Expect = 6.3
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -1
Query: 532 YQWPFPKPIVGKPCEPPTPSGAPSAQRAP 446
YQ P P++ P PPT SG P+A P
Sbjct: 59 YQASRPPPVLPPPL-PPTSSGPPAASSRP 86
>AL023835-3|CAD56253.1| 566|Caenorhabditis elegans Hypothetical
protein Y37A1B.2c protein.
Length = 566
Score = 27.5 bits (58), Expect = 6.3
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -1
Query: 532 YQWPFPKPIVGKPCEPPTPSGAPSAQRAP 446
YQ P P++ P PPT SG P+A P
Sbjct: 59 YQASRPPPVLPPPL-PPTSSGPPAASSRP 86
>AL023835-1|CAA19486.1| 164|Caenorhabditis elegans Hypothetical
protein Y37A1B.2a protein.
Length = 164
Score = 27.5 bits (58), Expect = 6.3
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -1
Query: 532 YQWPFPKPIVGKPCEPPTPSGAPSAQRAP 446
YQ P P++ P PPT SG P+A P
Sbjct: 59 YQASRPPPVLPPPL-PPTSSGPPAASSRP 86
>AF273820-1|AAG15169.1| 624|Caenorhabditis elegans nuclear receptor
NHR-66 protein.
Length = 624
Score = 27.5 bits (58), Expect = 6.3
Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Frame = -1
Query: 487 PPTPSGAPSAQRAPVXPYXHCDXHSYSPRVEQYKQLLEKEQKLCQDXEQXRK-QMVSVTX 311
PP+P + + AP+ P H R +Q++Q ++Q+ Q RK M ++
Sbjct: 31 PPSPLTSLPQKPAPLMPSGHVTTVDQQNR-QQHQQQQRQQQQAQQQNSMARKYSMDTIQH 89
Query: 310 DILDHP 293
+ HP
Sbjct: 90 HTMQHP 95
>AF273819-1|AAG15168.1| 619|Caenorhabditis elegans nuclear receptor
NHR-66 protein.
Length = 619
Score = 27.5 bits (58), Expect = 6.3
Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Frame = -1
Query: 487 PPTPSGAPSAQRAPVXPYXHCDXHSYSPRVEQYKQLLEKEQKLCQDXEQXRK-QMVSVTX 311
PP+P + + AP+ P H R +Q++Q ++Q+ Q RK M ++
Sbjct: 28 PPSPLTSLPQKPAPLMPSGHVTTVDQQNR-QQHQQQQRQQQQAQQQNSMARKYSMDTIQH 86
Query: 310 DILDHP 293
+ HP
Sbjct: 87 HTMQHP 92
>AF047660-6|AAV34786.1| 659|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 66, isoform d protein.
Length = 659
Score = 27.5 bits (58), Expect = 6.3
Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Frame = -1
Query: 487 PPTPSGAPSAQRAPVXPYXHCDXHSYSPRVEQYKQLLEKEQKLCQDXEQXRK-QMVSVTX 311
PP+P + + AP+ P H R +Q++Q ++Q+ Q RK M ++
Sbjct: 66 PPSPLTSLPQKPAPLMPSGHVTTVDQQNR-QQHQQQQRQQQQAQQQNSMARKYSMDTIQH 124
Query: 310 DILDHP 293
+ HP
Sbjct: 125 HTMQHP 130
>AF047660-5|AAM54168.1| 733|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 66, isoform c protein.
Length = 733
Score = 27.5 bits (58), Expect = 6.3
Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Frame = -1
Query: 487 PPTPSGAPSAQRAPVXPYXHCDXHSYSPRVEQYKQLLEKEQKLCQDXEQXRK-QMVSVTX 311
PP+P + + AP+ P H R +Q++Q ++Q+ Q RK M ++
Sbjct: 140 PPSPLTSLPQKPAPLMPSGHVTTVDQQNR-QQHQQQQRQQQQAQQQNSMARKYSMDTIQH 198
Query: 310 DILDHP 293
+ HP
Sbjct: 199 HTMQHP 204
>Z50029-8|CAA90342.2| 668|Caenorhabditis elegans Hypothetical
protein ZC504.3 protein.
Length = 668
Score = 27.1 bits (57), Expect = 8.4
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = -1
Query: 424 DXHSYSPRVEQYKQLLEKEQKLCQDXEQXRKQ 329
D + +P EQ++ + E EQKL +D + R++
Sbjct: 247 DKYGKTPDKEQWESMTENEQKLHRDAMKKRRE 278
>U64834-2|AAB04823.2| 1145|Caenorhabditis elegans Hypothetical protein
F54D11.2 protein.
Length = 1145
Score = 27.1 bits (57), Expect = 8.4
Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 6/35 (17%)
Frame = -1
Query: 523 PFPKPIVGKPC------EPPTPSGAPSAQRAPVXP 437
P P PI+ P +PP PS AP R PV P
Sbjct: 1105 PPPLPILQNPVATPMSQQPPLPSPAPPPPRGPVDP 1139
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 27.1 bits (57), Expect = 8.4
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = -1
Query: 511 PIVGKPCEPPTPSGAPSAQRAPVXP 437
PI G P PP P G P P P
Sbjct: 737 PITGGPPPPPPPGGLPPISGGPPPP 761
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 27.1 bits (57), Expect = 8.4
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = -1
Query: 511 PIVGKPCEPPTPSGAPSAQRAPVXP 437
PI G P PP P G P P P
Sbjct: 737 PITGGPPPPPPPGGLPPISGGPPPP 761
>U23515-9|AAP82644.1| 360|Caenorhabditis elegans Hypothetical
protein R144.4a protein.
Length = 360
Score = 27.1 bits (57), Expect = 8.4
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = -1
Query: 523 PFPKPIVGKPCEPPTPSGAPSAQRAP 446
P P P V P PTP P AQ+ P
Sbjct: 158 PPPPPPVSVPSSKPTPPPPPPAQQKP 183
>U23515-8|AAP82645.1| 362|Caenorhabditis elegans Hypothetical
protein R144.4b protein.
Length = 362
Score = 27.1 bits (57), Expect = 8.4
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = -1
Query: 523 PFPKPIVGKPCEPPTPSGAPSAQRAP 446
P P P V P PTP P AQ+ P
Sbjct: 158 PPPPPPVSVPSSKPTPPPPPPAQQKP 183
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 27.1 bits (57), Expect = 8.4
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = -1
Query: 511 PIVGKPCEPPTPSGAPSAQRAPVXP 437
PI G P PP P G P P P
Sbjct: 320 PITGGPPPPPPPGGLPPISGGPPPP 344
>AF016448-12|AAB65959.1| 316|Caenorhabditis elegans Hypothetical
protein F41E6.11 protein.
Length = 316
Score = 27.1 bits (57), Expect = 8.4
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = -1
Query: 517 PKPIVGKPCEPPTPSGAPSAQRAPVXP 437
P PC PPTP P A AP P
Sbjct: 118 PYACAAPPCPPPTPVYEPYACAAPPCP 144
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,159,179
Number of Sequences: 27780
Number of extensions: 137936
Number of successful extensions: 757
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 748
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1049512662
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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