Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13i24
(414 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl... 40 2e-04
SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyce... 32 0.031
SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb... 30 0.16
SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex sub... 28 0.50
SPAC17A5.09c |||protein phosphatase regulatory subunit Glc9|Schi... 28 0.50
SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomy... 28 0.66
SPBC337.06c |cwf15||complexed with Cdc5 protein Cwf15 |Schizosac... 27 0.87
SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces po... 27 0.87
SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|c... 27 0.87
SPAC20H4.03c |tfs1||transcription elongation factor TFIIS |Schiz... 27 1.2
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo... 27 1.5
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ... 27 1.5
SPBC337.10c |||anamorsin family protein|Schizosaccharomyces pomb... 26 2.0
SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex ... 26 2.0
SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce... 26 2.0
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom... 26 2.7
SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1 |Schizosacc... 25 3.5
SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces ... 25 3.5
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa... 25 3.5
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce... 25 3.5
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 25 3.5
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ... 25 6.1
SPAC1002.10c |sgt1||SGT1 family transcriptional regulator Sgt1|S... 25 6.1
SPBC12C2.05c |||diacylglycerol binding protein Bzz1 |Schizosacch... 25 6.1
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe... 24 8.1
SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase Pl... 24 8.1
SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|ch... 24 8.1
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 24 8.1
>SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 39.5 bits (88), Expect = 2e-04
Identities = 34/124 (27%), Positives = 57/124 (45%), Gaps = 4/124 (3%)
Frame = -3
Query: 403 STTNSDCSNGQICINKKMDEFFKKLKNT-VTYDNIVGLIKNEKNSTFSKEEESRVITENN 227
S T +C+N + C+++ E+F KLK + L TF +E +
Sbjct: 110 SLTVEECTNPEYCMDEHDTEYFLKLKQAQPSLSKFSELDFEIVMQTFEEEINQNQPFLSM 169
Query: 226 ETKKIVDFGELTSKFKGDSSKHVLRNLKSQSS---KSVNKAKGGVLLKSSDQNMNLTDDD 56
+T +I+ EL + F+ + L+ L SQ + +KGG+ + + Q + DDD
Sbjct: 170 DTSQILPLSELITSFELKDVLY-LKPLASQVYPYWRERRISKGGLPIMAKAQVGDDKDDD 228
Query: 55 DPYV 44
DPYV
Sbjct: 229 DPYV 232
>SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 32.3 bits (70), Expect = 0.031
Identities = 22/76 (28%), Positives = 33/76 (43%)
Frame = -3
Query: 334 KLKNTVTYDNIVGLIKNEKNSTFSKEEESRVITENNETKKIVDFGELTSKFKGDSSKHVL 155
K K T +N+ + + F KE E + ++N G +K GD+S+
Sbjct: 357 KSKRVKTLENLSIMDFVQPKQMFGKEPEGYLSNQSNN-------GSAQNKKSGDNSEKTK 409
Query: 154 RNLKSQSSKSVNKAKG 107
+LKS S KS N G
Sbjct: 410 NSLKSSSKKSANTGSG 425
>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 331
Score = 29.9 bits (64), Expect = 0.16
Identities = 18/60 (30%), Positives = 28/60 (46%)
Frame = -3
Query: 412 KHSSTTNSDCSNGQICINKKMDEFFKKLKNTVTYDNIVGLIKNEKNSTFSKEEESRVITE 233
KH + D N I N + F ++T TY+N+ + KNE S SK + ++ E
Sbjct: 45 KHYTQVGEDADNSFISENTPKNTF----ESTQTYENLESISKNEPTSEASKPLLNELVPE 100
>SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex
subunit Php4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 295
Score = 28.3 bits (60), Expect = 0.50
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = -3
Query: 184 FKGDSSKHVLRNLKSQSSKSVNKAKGGVLLKSSDQN-MNLTDDD 56
F GDS+K + + S+ +KSV G + + S QN +N T ++
Sbjct: 165 FLGDSAKRIRVDSDSKDAKSVPSENGRIRVSMSPQNEINFTPEN 208
>SPAC17A5.09c |||protein phosphatase regulatory subunit
Glc9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 310
Score = 28.3 bits (60), Expect = 0.50
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = -3
Query: 259 EEESRVITENNETKKIVDFGELTSKFKGDSSKHVLRN-LKSQSSKSVNKAKGGVLLKSSD 83
EEE+ E N KK DF EL K +K + R+ L+S ++S + +SD
Sbjct: 244 EEEALSEAEENIPKKKPDFNELRKKHYFAMAKPLKRDELESSGTESDLERDNSDSGSASD 303
Query: 82 QNMN 71
NMN
Sbjct: 304 VNMN 307
>SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 559
Score = 27.9 bits (59), Expect = 0.66
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = -3
Query: 160 VLRNLKSQSSKSVNKAKGGVLLKSSDQNMNLTDDDDPYVKNDNIL 26
++ L + SKS ++K L K +D + + DDD+P N N++
Sbjct: 244 LIPRLTMKESKSYEQSKA--LNKYTDNDTYIADDDEPKKDNQNVV 286
>SPBC337.06c |cwf15||complexed with Cdc5 protein Cwf15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 265
Score = 27.5 bits (58), Expect = 0.87
Identities = 19/84 (22%), Positives = 35/84 (41%)
Frame = -3
Query: 400 TTNSDCSNGQICINKKMDEFFKKLKNTVTYDNIVGLIKNEKNSTFSKEEESRVITENNET 221
++NS+ S+ + + + ++L+N +++ EKN +E+ R I NE
Sbjct: 151 SSNSESSDEESDSEDETQQLLRELENIKQERKREQMLQEEKNRALEQEKREREIAFGNEL 210
Query: 220 KKIVDFGELTSKFKGDSSKHVLRN 149
G K + D V RN
Sbjct: 211 LNKASSGSFQVKRRWDEDV-VFRN 233
>SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 361
Score = 27.5 bits (58), Expect = 0.87
Identities = 18/60 (30%), Positives = 29/60 (48%)
Frame = +3
Query: 204 KSTIFFVSLFSVITLDSSSFEKVLFFSFLINPTILS*VTVFFNFLKNSSIFLFIQICPLL 383
KS+ +F+ + V + SFE +F F + + + VF N + S+ LF CP L
Sbjct: 19 KSSQWFLLIIIVEVTITLSFEGYVFHHFRL--ITVEKIDVFINAMVPSTFALFCMACPYL 76
>SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 27.5 bits (58), Expect = 0.87
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Frame = -3
Query: 265 SKEEESRVITENNETKKIVDFGELTSKFKGDSSKHVLRNLKSQSSKSVNKAKGGVLL-KS 89
+KEE+ + +E NETK + + + K + Q S S +KAKG +
Sbjct: 197 NKEEDKEIHSEENETKDEIKSEKKEPEIKKQEGGSSTEKV-GQPSSSDDKAKGSTSKDQP 255
Query: 88 SDQNMNLTDDDDPYVK 41
S++ +D D +K
Sbjct: 256 SEEEEKTSDIQDRKIK 271
>SPAC20H4.03c |tfs1||transcription elongation factor TFIIS
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 293
Score = 27.1 bits (57), Expect = 1.2
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Frame = -3
Query: 304 IVGLIKNEKNSTFSKEEESRVITENNETKKIVDFGELTSKFKGDSSKHVLRNLKSQSSKS 125
+VG +++ N ++ V + K + T+ SKH ++ SQ+ K
Sbjct: 51 VVGKLRSHPNEKVGEQAREIVKKWKADVSKGRPL-KTTTTTSSTPSKHA--DVGSQAQKQ 107
Query: 124 VNK--AKGGVLLKSSDQNMNLTDD 59
V K + G KS + N+N+TDD
Sbjct: 108 VQKQSSSGQRTFKSDNVNVNVTDD 131
>SPBC12C2.02c |ste20|ste16|sterility protein
Ste20|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1309
Score = 26.6 bits (56), Expect = 1.5
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = -2
Query: 173 LVQACATKFKKSIKQKREQSERWRSPEIE*SKHEFD 66
L+Q T FKK K+++E ++ + E+E SK + +
Sbjct: 60 LLQVFDTNFKKETKERKEMLKKKCTDELESSKKKIE 95
>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 791
Score = 26.6 bits (56), Expect = 1.5
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -3
Query: 154 RNLKSQSSKSVNKAKGGVLLKSSDQNMNLT 65
RN++S N+ +GGV K++D + N+T
Sbjct: 46 RNVESIKVVPENRVRGGVAAKATDSSSNVT 75
>SPBC337.10c |||anamorsin family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 288
Score = 26.2 bits (55), Expect = 2.0
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = -3
Query: 148 LKSQSSKSVNKAKGGVLLKSSDQNMNLTDDDDPYVKNDNIL 26
L +++ +S +K K LKS +N+ DDD + D +L
Sbjct: 131 LSNKNGQSASKNKILDFLKSDKENLISGDDDQELIDEDELL 171
>SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex
subunit Orp3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 26.2 bits (55), Expect = 2.0
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Frame = -3
Query: 241 ITENNETKKIVDFGELTSKFKGDSSKHVLRNLKSQSSKSVNKA---KGGVLLKSSDQNMN 71
+ EN TK + + E+T+ DS+ VLR L +S+ V++ + ++ S +M+
Sbjct: 49 LRENLCTKVLNELEEITTHTTYDSNARVLRQLCEHASEPVDETGLLRTAIVCDKSSNSMH 108
Query: 70 L 68
L
Sbjct: 109 L 109
>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 154
Score = 26.2 bits (55), Expect = 2.0
Identities = 15/55 (27%), Positives = 28/55 (50%)
Frame = -3
Query: 181 KGDSSKHVLRNLKSQSSKSVNKAKGGVLLKSSDQNMNLTDDDDPYVKNDNILAFL 17
K KH+LR +K + K+V K + G+++ + D + P + DN + +L
Sbjct: 47 KASKQKHILRGVK-EVVKAVRKGEKGLVILAGDISPMDVISHIPVLCEDNNVPYL 100
>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1125
Score = 25.8 bits (54), Expect = 2.7
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = -3
Query: 259 EEESRVITENNETKKIVDFGELTSKFKGDSSK 164
E S ++ NE K VD+ +L S F+ DSSK
Sbjct: 687 ESASELLKSRNE-KLCVDYDKLRSVFEEDSSK 717
>SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 677
Score = 25.4 bits (53), Expect = 3.5
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = -3
Query: 172 SSKHVLRNLKSQSSKSVNKAKGGVLLKSSDQNMNLTDDDDPYVK 41
SS ++R+L ++ SVN V + D + L DD DPYV+
Sbjct: 98 SSNPMIRSLALRTLTSVNIKNFWVA--AMDPIVRLLDDTDPYVR 139
>SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 25.4 bits (53), Expect = 3.5
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = -3
Query: 289 KNEKNSTFSKEEESRVITENNETKKIVDFGELTS 188
KN N S++EE ++E+ + +DFG+ +S
Sbjct: 230 KNPVNENESEDEEGLSLSEDGKKFANIDFGDYSS 263
>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
Par2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 627
Score = 25.4 bits (53), Expect = 3.5
Identities = 20/77 (25%), Positives = 35/77 (45%)
Frame = -3
Query: 292 IKNEKNSTFSKEEESRVITENNETKKIVDFGELTSKFKGDSSKHVLRNLKSQSSKSVNKA 113
+K+E+ S + +S I++N V+ ++ SSKH L+ LKS K K
Sbjct: 14 LKDEQGSHKNGHSKSHYISKNGS---YVETDDVKHTDTHHSSKHELKKLKSHFLKDTLKH 70
Query: 112 KGGVLLKSSDQNMNLTD 62
K S+++ +D
Sbjct: 71 KRNHHANSNNEKHENSD 87
>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1418
Score = 25.4 bits (53), Expect = 3.5
Identities = 29/113 (25%), Positives = 46/113 (40%), Gaps = 6/113 (5%)
Frame = -3
Query: 379 NGQICINKKMDEFFKKLKNTVTYDNIVGLIKNEKNSTFSKEEESRVITENNETKKIVDFG 200
NG+ C+ + K K Y + EKN K S+V+ ++ TKK FG
Sbjct: 65 NGKACLRVWLKH--KSRKRYHGYMTSTDKDEEEKNDYLLKSNGSKVLRDSTRTKKF-KFG 121
Query: 199 E-----LTSKFKGD-SSKHVLRNLKSQSSKSVNKAKGGVLLKSSDQNMNLTDD 59
+ L F D ++ + S ++K VN+ + L S + N T D
Sbjct: 122 KEFHCALNPSFVSDETASDSATSSSSDTNKKVNRKEHNE-LSLSHLSFNDTSD 173
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 25.4 bits (53), Expect = 3.5
Identities = 13/53 (24%), Positives = 27/53 (50%)
Frame = -3
Query: 211 VDFGELTSKFKGDSSKHVLRNLKSQSSKSVNKAKGGVLLKSSDQNMNLTDDDD 53
++ L S+ + +S + V ++ ++ K +NKA +D N +L +DD
Sbjct: 14 LELESLQSEIESESPQPVTKSKAKKNKKKLNKA--SAFNSDNDSNYDLKPEDD 64
>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2344
Score = 24.6 bits (51), Expect = 6.1
Identities = 17/50 (34%), Positives = 28/50 (56%)
Frame = -3
Query: 166 KHVLRNLKSQSSKSVNKAKGGVLLKSSDQNMNLTDDDDPYVKNDNILAFL 17
+H L + KS S + + + KSS+++ + TDDDD + IL+FL
Sbjct: 950 RHSLEDSKSIISALIPRIIDKIT-KSSEESQSSTDDDDRRI--FEILSFL 996
>SPAC1002.10c |sgt1||SGT1 family transcriptional regulator
Sgt1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 590
Score = 24.6 bits (51), Expect = 6.1
Identities = 21/89 (23%), Positives = 36/89 (40%), Gaps = 2/89 (2%)
Frame = -3
Query: 379 NGQICINKKMDEFFKKLKN--TVTYDNIVGLIKNEKNSTFSKEEESRVITENNETKKIVD 206
NG++ I + DEF KK+ +T + + I + N S+E + + K +
Sbjct: 145 NGEVIILRPEDEFLKKMNRCPPLTREQAIFQISSGSNLYTSREVNDSISQRLKKFPKAAN 204
Query: 205 FGELTSKFKGDSSKHVLRNLKSQSSKSVN 119
HVL+ K+ S +VN
Sbjct: 205 VKLRAICTVPRKIVHVLQKNKNLISSAVN 233
>SPBC12C2.05c |||diacylglycerol binding protein Bzz1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 24.6 bits (51), Expect = 6.1
Identities = 17/47 (36%), Positives = 21/47 (44%)
Frame = -3
Query: 172 SSKHVLRNLKSQSSKSVNKAKGGVLLKSSDQNMNLTDDDDPYVKNDN 32
S K+ LRNL S + K KG L S D + DDP N +
Sbjct: 309 SCKNYLRNLLVHSKNDLGKQKGE--LVSLDSQLEGLRVDDPNSANQS 353
>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 882
Score = 24.2 bits (50), Expect = 8.1
Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = -3
Query: 94 KSSDQNMNL-TDDDDPYVKNDNILAF 20
KS DQ + + T +DPYV+N + AF
Sbjct: 725 KSWDQLLEIYTKTNDPYVRNSCLRAF 750
>SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase
Plh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 623
Score = 24.2 bits (50), Expect = 8.1
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -3
Query: 358 KKMDEFFKKLKNTVTYDNIV 299
++ D++F KLK + Y NIV
Sbjct: 263 EERDKYFSKLKMFIEYSNIV 282
>SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 678
Score = 24.2 bits (50), Expect = 8.1
Identities = 8/21 (38%), Positives = 17/21 (80%)
Frame = -3
Query: 352 MDEFFKKLKNTVTYDNIVGLI 290
+DEFFK + T++Y++ +G++
Sbjct: 649 IDEFFKTKEITLSYEDALGVL 669
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 24.2 bits (50), Expect = 8.1
Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = -3
Query: 307 NIVGLIKNEKNSTFSKEEESRVITENNET--KKIVDFGELTSKFKGDS 170
N +G +K+ + S EEE + E+N T ++ D S F+ ++
Sbjct: 354 NTIGSLKDSRTSNSQLEEEMVELKESNRTIHSQLTDAESKLSSFEQEN 401
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,527,324
Number of Sequences: 5004
Number of extensions: 27502
Number of successful extensions: 159
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 144287194
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -