Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13i24
(414 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC025276-1|AAH25276.2| 556|Homo sapiens UTP18, small subunit (S... 32 0.87
AF151806-1|AAD34043.1| 521|Homo sapiens CGI-48 protein protein. 32 0.87
AK057217-1|BAB71383.1| 621|Homo sapiens protein ( Homo sapiens ... 29 4.6
BC128540-1|AAI28541.1| 488|Homo sapiens MAP9 protein protein. 29 6.1
BC056683-1|AAH56683.1| 278|Homo sapiens MAP9 protein protein. 29 6.1
BC022852-1|AAH22852.1| 441|Homo sapiens Unknown (protein for IM... 29 6.1
AB015617-1|BAA88763.1| 948|Homo sapiens ELKS protein. 29 6.1
BC129935-1|AAI29936.1| 1597|Homo sapiens PB1 protein protein. 29 8.1
BC129934-1|AAI29935.1| 1652|Homo sapiens PB1 protein protein. 29 8.1
BC115011-1|AAI15012.1| 1540|Homo sapiens PB1 protein protein. 29 8.1
BC115010-1|AAI15011.1| 1615|Homo sapiens PB1 protein protein. 29 8.1
AY281068-1|AAP34197.1| 1689|Homo sapiens polybromo-1D protein. 29 8.1
AK001926-1|BAA91982.1| 289|Homo sapiens protein ( Homo sapiens ... 29 8.1
AF225872-1|AAG48941.1| 1582|Homo sapiens polybromo-1 protein. 29 8.1
AF225870-1|AAG48939.1| 1602|Homo sapiens polybromo-1 protein. 29 8.1
AF197569-1|AAG34760.1| 1582|Homo sapiens BAF180 protein. 29 8.1
AF177387-1|AAG48933.1| 1634|Homo sapiens polybromo-1 protein. 29 8.1
>BC025276-1|AAH25276.2| 556|Homo sapiens UTP18, small subunit (SSU)
processome component, homolog (yeast) protein.
Length = 556
Score = 31.9 bits (69), Expect = 0.87
Identities = 21/95 (22%), Positives = 43/95 (45%), Gaps = 6/95 (6%)
Frame = -3
Query: 292 IKNEKNSTFSKEEESRVITENNETKKIVDFGELTSKFKGDSSKHVLR------NLKSQSS 131
++NE F +++ + E +E +++VD + ++F+ D K+ NLK +
Sbjct: 126 VENEAKGNFPPQKKPVWVDEEDEDEEMVDM--MNNRFRKDMMKNASESKLSKDNLKKRLK 183
Query: 130 KSVNKAKGGVLLKSSDQNMNLTDDDDPYVKNDNIL 26
+ A GGV + + DD+ D++L
Sbjct: 184 EEFQHAMGGVPAWAETTKRKTSSDDESEEDEDDLL 218
>AF151806-1|AAD34043.1| 521|Homo sapiens CGI-48 protein protein.
Length = 521
Score = 31.9 bits (69), Expect = 0.87
Identities = 21/95 (22%), Positives = 43/95 (45%), Gaps = 6/95 (6%)
Frame = -3
Query: 292 IKNEKNSTFSKEEESRVITENNETKKIVDFGELTSKFKGDSSKHVLR------NLKSQSS 131
++NE F +++ + E +E +++VD + ++F+ D K+ NLK +
Sbjct: 102 VENEAKGNFPPQKKPVWVDEEDEDEEMVDM--MNNRFRKDMMKNASESKLSKDNLKKRLK 159
Query: 130 KSVNKAKGGVLLKSSDQNMNLTDDDDPYVKNDNIL 26
+ A GGV + + DD+ D++L
Sbjct: 160 EEFQHAMGGVPAWAETTKRKTSSDDESEEDEDDLL 194
>AK057217-1|BAB71383.1| 621|Homo sapiens protein ( Homo sapiens
cDNA FLJ32655 fis, clone TESTI1000025, weakly similar to
M.musculus mRNA for testis-specific protein, DDC8. ).
Length = 621
Score = 29.5 bits (63), Expect = 4.6
Identities = 19/78 (24%), Positives = 35/78 (44%)
Frame = -3
Query: 289 KNEKNSTFSKEEESRVITENNETKKIVDFGELTSKFKGDSSKHVLRNLKSQSSKSVNKAK 110
K E K+ ES E+ + + + K + + + L +LKS S+++ + +
Sbjct: 506 KAEMEQRRQKQLESLEQMEHPDMSLEIHYKAELEKERREQRRARLAHLKSSSTRAQERER 565
Query: 109 GGVLLKSSDQNMNLTDDD 56
G L +S +L DDD
Sbjct: 566 GSELSTTSPSGTSLADDD 583
>BC128540-1|AAI28541.1| 488|Homo sapiens MAP9 protein protein.
Length = 488
Score = 29.1 bits (62), Expect = 6.1
Identities = 28/116 (24%), Positives = 49/116 (42%), Gaps = 1/116 (0%)
Frame = -3
Query: 391 SDCSNGQICINKKMDEFFKKLKNTVTYDNIVGLIKNEKNSTFSKEEESRVITENNETKKI 212
SD S + +NKKM++F ++ L N+ N +K+E I +N E
Sbjct: 60 SDTSADENSVNKKMNDFHISDDEEKNPSKLLFLKTNKSNGNITKDEPVCAI-KNEEEMAP 118
Query: 211 VDFGELTSKFKGDSSKHVLRNLKSQSSKSVNKAKGGVL-LKSSDQNMNLTDDDDPY 47
++ K +S ++ + + K K K +L +KS+ N D DD +
Sbjct: 119 DGCEDIVVKSFSESQN---KDEEFEKDKIKMKPKPRILSIKSTSSENNSLDTDDHF 171
>BC056683-1|AAH56683.1| 278|Homo sapiens MAP9 protein protein.
Length = 278
Score = 29.1 bits (62), Expect = 6.1
Identities = 28/116 (24%), Positives = 49/116 (42%), Gaps = 1/116 (0%)
Frame = -3
Query: 391 SDCSNGQICINKKMDEFFKKLKNTVTYDNIVGLIKNEKNSTFSKEEESRVITENNETKKI 212
SD S + +NKKM++F ++ L N+ N +K+E I +N E
Sbjct: 76 SDTSADENSVNKKMNDFHISDDEEKNPSKLLFLKTNKSNGNITKDEPVCAI-KNEEEMAP 134
Query: 211 VDFGELTSKFKGDSSKHVLRNLKSQSSKSVNKAKGGVL-LKSSDQNMNLTDDDDPY 47
++ K +S ++ + + K K K +L +KS+ N D DD +
Sbjct: 135 DGCEDIVVKSFSESQN---KDEEFEKDKIKMKPKPRILSIKSTSSENNSLDTDDHF 187
>BC022852-1|AAH22852.1| 441|Homo sapiens Unknown (protein for
IMAGE:4079119) protein.
Length = 441
Score = 29.1 bits (62), Expect = 6.1
Identities = 28/116 (24%), Positives = 49/116 (42%), Gaps = 1/116 (0%)
Frame = -3
Query: 391 SDCSNGQICINKKMDEFFKKLKNTVTYDNIVGLIKNEKNSTFSKEEESRVITENNETKKI 212
SD S + +NKKM++F ++ L N+ N +K+E I +N E
Sbjct: 60 SDTSADENSVNKKMNDFHISDDEEKNPSKLLFLKTNKSNGNITKDEPVCAI-KNEEEMAP 118
Query: 211 VDFGELTSKFKGDSSKHVLRNLKSQSSKSVNKAKGGVL-LKSSDQNMNLTDDDDPY 47
++ K +S ++ + + K K K +L +KS+ N D DD +
Sbjct: 119 DGCEDIVVKSFSESQN---KDEEFEKDKIKMKPKPRILSIKSTSSENNSLDTDDHF 171
>AB015617-1|BAA88763.1| 948|Homo sapiens ELKS protein.
Length = 948
Score = 29.1 bits (62), Expect = 6.1
Identities = 19/74 (25%), Positives = 39/74 (52%)
Frame = -3
Query: 235 ENNETKKIVDFGELTSKFKGDSSKHVLRNLKSQSSKSVNKAKGGVLLKSSDQNMNLTDDD 56
+N++ KKI + LTS+ D +K V NLK + + V K K +L+ + + + +D
Sbjct: 744 KNDKDKKIAELESLTSRQVKDQNKKV-ANLKHK--EQVEKKKSAQMLEEARRREDNLNDS 800
Query: 55 DPYVKNDNILAFLD 14
++ + +L ++
Sbjct: 801 SQQLQVEELLMAME 814
>BC129935-1|AAI29936.1| 1597|Homo sapiens PB1 protein protein.
Length = 1597
Score = 28.7 bits (61), Expect = 8.1
Identities = 17/73 (23%), Positives = 29/73 (39%)
Frame = -3
Query: 385 CSNGQICINKKMDEFFKKLKNTVTYDNIVGLIKNEKNSTFSKEEESRVITENNETKKIVD 206
C NG+I ++ + K L N V + L K + +EEE R ++ ++
Sbjct: 895 CKNGEILLSPALSYTTKHLHNDVEKERKEKLPKEIEEDKLKREEEKREAEKSEDSSGAAG 954
Query: 205 FGELTSKFKGDSS 167
L + D S
Sbjct: 955 LSGLHRTYSQDCS 967
>BC129934-1|AAI29935.1| 1652|Homo sapiens PB1 protein protein.
Length = 1652
Score = 28.7 bits (61), Expect = 8.1
Identities = 17/73 (23%), Positives = 29/73 (39%)
Frame = -3
Query: 385 CSNGQICINKKMDEFFKKLKNTVTYDNIVGLIKNEKNSTFSKEEESRVITENNETKKIVD 206
C NG+I ++ + K L N V + L K + +EEE R ++ ++
Sbjct: 895 CKNGEILLSPALSYTTKHLHNDVEKERKEKLPKEIEEDKLKREEEKREAEKSEDSSGAAG 954
Query: 205 FGELTSKFKGDSS 167
L + D S
Sbjct: 955 LSGLHRTYSQDCS 967
>BC115011-1|AAI15012.1| 1540|Homo sapiens PB1 protein protein.
Length = 1540
Score = 28.7 bits (61), Expect = 8.1
Identities = 17/73 (23%), Positives = 29/73 (39%)
Frame = -3
Query: 385 CSNGQICINKKMDEFFKKLKNTVTYDNIVGLIKNEKNSTFSKEEESRVITENNETKKIVD 206
C NG+I ++ + K L N V + L K + +EEE R ++ ++
Sbjct: 786 CKNGEILLSPALSYTTKHLHNDVEKERKEKLPKEIEEDKLKREEEKREAEKSEDSSGAAG 845
Query: 205 FGELTSKFKGDSS 167
L + D S
Sbjct: 846 LSGLHRTYSQDCS 858
>BC115010-1|AAI15011.1| 1615|Homo sapiens PB1 protein protein.
Length = 1615
Score = 28.7 bits (61), Expect = 8.1
Identities = 17/73 (23%), Positives = 29/73 (39%)
Frame = -3
Query: 385 CSNGQICINKKMDEFFKKLKNTVTYDNIVGLIKNEKNSTFSKEEESRVITENNETKKIVD 206
C NG+I ++ + K L N V + L K + +EEE R ++ ++
Sbjct: 886 CKNGEILLSPALSYTTKHLHNDVEKERKEKLPKEIEEDKLKREEEKREAEKSEDSSGAAG 945
Query: 205 FGELTSKFKGDSS 167
L + D S
Sbjct: 946 LSGLHRTYSQDCS 958
>AY281068-1|AAP34197.1| 1689|Homo sapiens polybromo-1D protein.
Length = 1689
Score = 28.7 bits (61), Expect = 8.1
Identities = 17/73 (23%), Positives = 29/73 (39%)
Frame = -3
Query: 385 CSNGQICINKKMDEFFKKLKNTVTYDNIVGLIKNEKNSTFSKEEESRVITENNETKKIVD 206
C NG+I ++ + K L N V + L K + +EEE R ++ ++
Sbjct: 880 CKNGEILLSPALSYTTKHLHNDVEKERKEKLPKEIEEDKLKREEEKREAEKSEDSSGAAG 939
Query: 205 FGELTSKFKGDSS 167
L + D S
Sbjct: 940 LSGLHRTYSQDCS 952
>AK001926-1|BAA91982.1| 289|Homo sapiens protein ( Homo sapiens
cDNA FLJ11064 fis, clone PLACE1004824. ).
Length = 289
Score = 28.7 bits (61), Expect = 8.1
Identities = 17/73 (23%), Positives = 29/73 (39%)
Frame = -3
Query: 385 CSNGQICINKKMDEFFKKLKNTVTYDNIVGLIKNEKNSTFSKEEESRVITENNETKKIVD 206
C NG+I ++ + K L N V + L K + +EEE R ++ ++
Sbjct: 37 CKNGEILLSPALSYTTKHLHNDVEKERKEKLPKEIEEDKLKREEEKREAEKSEDSSGAAG 96
Query: 205 FGELTSKFKGDSS 167
L + D S
Sbjct: 97 LSGLHRTYSQDCS 109
>AF225872-1|AAG48941.1| 1582|Homo sapiens polybromo-1 protein.
Length = 1582
Score = 28.7 bits (61), Expect = 8.1
Identities = 17/73 (23%), Positives = 29/73 (39%)
Frame = -3
Query: 385 CSNGQICINKKMDEFFKKLKNTVTYDNIVGLIKNEKNSTFSKEEESRVITENNETKKIVD 206
C NG+I ++ + K L N V + L K + +EEE R ++ ++
Sbjct: 880 CKNGEILLSPALSYTTKHLHNDVEKERKEKLPKEIEEDKLKREEEKREAEKSEDSSGAAG 939
Query: 205 FGELTSKFKGDSS 167
L + D S
Sbjct: 940 LSGLHRTYSQDCS 952
>AF225870-1|AAG48939.1| 1602|Homo sapiens polybromo-1 protein.
Length = 1602
Score = 28.7 bits (61), Expect = 8.1
Identities = 17/73 (23%), Positives = 29/73 (39%)
Frame = -3
Query: 385 CSNGQICINKKMDEFFKKLKNTVTYDNIVGLIKNEKNSTFSKEEESRVITENNETKKIVD 206
C NG+I ++ + K L N V + L K + +EEE R ++ ++
Sbjct: 848 CKNGEILLSPALSYTTKHLHNDVEKERKEKLPKEIEEDKLKREEEKREAEKSEDSSGAAG 907
Query: 205 FGELTSKFKGDSS 167
L + D S
Sbjct: 908 LSGLHRTYSQDCS 920
>AF197569-1|AAG34760.1| 1582|Homo sapiens BAF180 protein.
Length = 1582
Score = 28.7 bits (61), Expect = 8.1
Identities = 17/73 (23%), Positives = 29/73 (39%)
Frame = -3
Query: 385 CSNGQICINKKMDEFFKKLKNTVTYDNIVGLIKNEKNSTFSKEEESRVITENNETKKIVD 206
C NG+I ++ + K L N V + L K + +EEE R ++ ++
Sbjct: 880 CKNGEILLSPALSYTTKHLHNDVEKERKEKLPKEIEEDKLKREEEKREAEKSEDSSGAAG 939
Query: 205 FGELTSKFKGDSS 167
L + D S
Sbjct: 940 LSGLHRTYSQDCS 952
>AF177387-1|AAG48933.1| 1634|Homo sapiens polybromo-1 protein.
Length = 1634
Score = 28.7 bits (61), Expect = 8.1
Identities = 17/73 (23%), Positives = 29/73 (39%)
Frame = -3
Query: 385 CSNGQICINKKMDEFFKKLKNTVTYDNIVGLIKNEKNSTFSKEEESRVITENNETKKIVD 206
C NG+I ++ + K L N V + L K + +EEE R ++ ++
Sbjct: 880 CKNGEILLSPALSYTTKHLHNDVEKERKEKLPKEIEEDKLKREEEKREAEKSEDSSGAAG 939
Query: 205 FGELTSKFKGDSS 167
L + D S
Sbjct: 940 LSGLHRTYSQDCS 952
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 47,049,592
Number of Sequences: 237096
Number of extensions: 748992
Number of successful extensions: 1959
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1931
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1957
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3087725076
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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