Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13i24
         (414 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    25   0.26 
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          24   0.78 
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   1.0  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              20   9.6  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 25.4 bits (53), Expect = 0.26
 Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 5/93 (5%)
 Frame = -3

Query: 388 DCSNGQICINKKMDEFFKKLKNTVTYDNIVGLIKNEKNSTFSKEEESRVITE--NNETKK 215
           D  NG + IN+ + +     KNT+       L  NE+  T   E+ +R+     N   K+
Sbjct: 405 DSYNGSMEINQNIAQNIDHAKNTIIDYRNNDLSINEEKRTIENEQLNRMYKSYPNYIDKE 464

Query: 214 IVDFG-ELTSKFKGDSSKH--VLRNLKSQSSKS 125
             D   E++++ K ++ ++  VL+N +    KS
Sbjct: 465 TKDMNLEISTRPKSNTVENACVLKNTEIFKDKS 497


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.8 bits (49), Expect = 0.78
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +3

Query: 237 VITLDSSSFEKVLFFSFLINPTILS*VTVFFNFLK 341
           V++  SS F+K+L  +   +PTI+    V FN LK
Sbjct: 53  VLSACSSYFQKLLLSNPCKHPTIIMPQDVCFNDLK 87


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 23.4 bits (48), Expect = 1.0
 Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
 Frame = -3

Query: 274  STFSKEEESRVITENNETKKIVDFGELTSK-FKGDSSKHVLRNLKSQSSKSVNKAKGGVL 98
            +T  K E   ++  +  +KK++  GEL S     D     L ++ +  +K V K    ++
Sbjct: 891  ATSVKAEPGSIMAMSESSKKVLSPGELLSSCVSNDGGCSSLVDVSTPVNKKVYKQNDYIV 950

Query: 97   LKSSDQN 77
             +SS  +
Sbjct: 951  DESSSSS 957


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 20.2 bits (40), Expect = 9.6
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +1

Query: 208 RRFFSFH 228
           RRFFSFH
Sbjct: 504 RRFFSFH 510


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,019
Number of Sequences: 438
Number of extensions: 1683
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10503195
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)