Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13i21
         (763 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC7D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    28   1.7  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    27   3.9  
SPCC16A11.03c |||DUF2009 protein|Schizosaccharomyces pombe|chr 3...    26   6.7  
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1...    25   8.9  

>SPAC7D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 312

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
 Frame = +3

Query: 471 LHFRES--LHLYP*EVHLY*LVNYQIFMKNNNDVNWKMFCRHNFKFE 605
           L F +S  LH +    HL   V Y +  +   D++W    R N KFE
Sbjct: 113 LEFSKSSLLHPFKRNRHLLSFVPYPMTAETLGDISWSFSRRENMKFE 159


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
            Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = -1

Query: 145  VLKPML*FLRTIVVYVFILFKISNAP 68
            +LKP+L ++R  ++ +FI+F IS  P
Sbjct: 1317 MLKPVLDWIRRCIISIFIVFFISFLP 1342


>SPCC16A11.03c |||DUF2009 protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 466

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +3

Query: 27  SNLINNVXP*KEKNGALEILKRMKTYTTIVLKNYNIG 137
           +NL+    P    N   E+LK  +  +  +LK YN G
Sbjct: 169 NNLLKQSDPQSNANAKAELLKEREEASETLLKKYNPG 205


>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1023

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 16/53 (30%), Positives = 29/53 (54%)
 Frame = +2

Query: 71  SIRNLEKNENVYNNSSQKLQHRFQYRYSLP*TNLYKIK*KHRGIICLSQHNTS 229
           S + L+K +++   +  KLQ+ +Q + SLP  NL      H   +  +Q++TS
Sbjct: 422 SAKALKKQKHLVPENKSKLQYVWQKKESLPYANLTSASNTH-FFLSENQNDTS 473


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,855,893
Number of Sequences: 5004
Number of extensions: 60021
Number of successful extensions: 118
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)