Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13i21
         (763 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK124803-1|BAC85953.1|  180|Homo sapiens protein ( Homo sapiens ...    32   1.9  
AY356402-1|AAR13653.1| 3222|Homo sapiens fat-like cadherin FATJ ...    30   7.8  

>AK124803-1|BAC85953.1|  180|Homo sapiens protein ( Homo sapiens
           cDNA FLJ42813 fis, clone BRCAN2012355. ).
          Length = 180

 Score = 32.3 bits (70), Expect = 1.9
 Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = -3

Query: 275 HISVLQHI*FCKKYNMKYYVVTNI*-CLYVST*FYINLFREDYICIETYVVIFENYCC 105
           H  +  HI  C    +  Y+ T+I  C++++   Y++++   Y CI+ Y+ ++  Y C
Sbjct: 84  HTYMCAHIHMCVYTYIYVYIYTHIHICVHIN--MYVSIYVYIYTCIQIYIYMYTLYVC 139


>AY356402-1|AAR13653.1| 3222|Homo sapiens fat-like cadherin FATJ
            protein protein.
          Length = 3222

 Score = 30.3 bits (65), Expect = 7.8
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = +3

Query: 57   KEKNGALEILKRMKTYTTIVLKNYNIGFNTDIVFPKQIYIKLSRNIEALYV 209
            + +NG L  ++    YTT+ +KN  + F +D      I  K+ RNI  +YV
Sbjct: 2494 RSENGVLIHIQESSNYTTVKIKNGKVYFTSD----AGIAGKVERNIPEVYV 2540


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,512,196
Number of Sequences: 237096
Number of extensions: 1731728
Number of successful extensions: 2138
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2089
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2138
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9144232952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)