Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13i19
         (667 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po...    27   2.4  
SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomy...    26   5.6  
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po...    25   7.4  
SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit...    25   9.8  
SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p...    25   9.8  

>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 646

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +2

Query: 137 SLLSRHTMEWLMRSHALKLKRIFIIVIEYMISNRV 241
           SL  +   EW+ R   L  K+++ ++++ +I NRV
Sbjct: 556 SLALQRGREWIQRLKPLVPKQLYEVILQAVIDNRV 590


>SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 581

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -1

Query: 445 KFILVSIHSDRACLYFEHRNEWI 377
           + I +S HS +A + +E  N W+
Sbjct: 557 EMIFISEHSQKAAIIYEDHNSWL 579


>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 937

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -1

Query: 262 FLIPGHFYSIRNHVFDDYYEYPFQFQRMRSH*P 164
           F IPGHF+  ++       +  F+FQ  ++H P
Sbjct: 236 FQIPGHFFISKSLALSYSIKTGFKFQIWKAHNP 268


>SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit
           Gpa2 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 354

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 4/86 (4%)
 Frame = +2

Query: 53  NKYTSFYKKIKKENFEQTQKEYERS*NVSLLSRHTMEWLMRSHALKLKRIFI---IVIEY 223
           NK+  F KK++   F+    +YE   +V  ++R+ + WL  + ++   +  I   I    
Sbjct: 269 NKFDLFRKKLEHVPFQDYFPQYEGKNSVKSITRYIL-WLFVNPSINRAKHNIYPHITTAV 327

Query: 224 MISN-RVEMSRN*EINLVHNSPRAGM 298
             SN +V  S   E  L H+   AGM
Sbjct: 328 DTSNIKVVFSAVKETILQHSLKEAGM 353


>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1033

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +1

Query: 355 FKANVFSKSIHYDV-QNTNMPDHYVLKQV*ISRDXILTIQ 471
           F A  + + + YD+ Q+TN   H  + +V I RD   TIQ
Sbjct: 328 FDALNYEEHVDYDIIQSTNPAYHNAIVRVNIFRDHRQTIQ 367


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,561,805
Number of Sequences: 5004
Number of extensions: 50011
Number of successful extensions: 113
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)