Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13i19
         (667 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0331 - 14503063-14503697,14503744-14504019,14504353-14504635     31   1.1  
03_04_0212 + 18670122-18670326,18671946-18672385                       30   1.4  
02_03_0111 + 15357384-15357395,15357762-15358055                       30   1.9  
06_01_0070 + 582659-583426,583535-583624,584130-584208,584387-58...    28   5.8  

>06_02_0331 - 14503063-14503697,14503744-14504019,14504353-14504635
          Length = 397

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 18/52 (34%), Positives = 28/52 (53%)
 Frame = +2

Query: 53  NKYTSFYKKIKKENFEQTQKEYERS*NVSLLSRHTMEWLMRSHALKLKRIFI 208
           +K  S  KK++KEN E   +  E    ++ L R+  + L RS   K+KR F+
Sbjct: 336 HKLASQVKKLRKENIEFRDRNAELGVELAEL-RNNFDTLSRSLCAKIKRAFV 386


>03_04_0212 + 18670122-18670326,18671946-18672385
          Length = 214

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 18/52 (34%), Positives = 29/52 (55%)
 Frame = +2

Query: 53  NKYTSFYKKIKKENFEQTQKEYERS*NVSLLSRHTMEWLMRSHALKLKRIFI 208
           +K T+  KK++KEN E   +  E    ++ + R+ +  L RS   K+KR FI
Sbjct: 159 HKLTAQVKKLRKENIELRDRNTELGVELAEI-RNNVGTLSRSLCAKIKRAFI 209


>02_03_0111 + 15357384-15357395,15357762-15358055
          Length = 101

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 19/58 (32%), Positives = 29/58 (50%)
 Frame = +2

Query: 35  LTNFINNKYTSFYKKIKKENFEQTQKEYERS*NVSLLSRHTMEWLMRSHALKLKRIFI 208
           L   + +K  S  KK++KEN E   +  E    ++ L R+  + L R    K+KR FI
Sbjct: 34  LPEHLVHKLASQVKKLRKENIELRDRNAELGVELAEL-RNNFDTLSRRLCAKIKRAFI 90


>06_01_0070 +
           582659-583426,583535-583624,584130-584208,584387-584493,
           584619-584740,585003-585030,587148-587390,587986-588153,
           589133-589226,589648-589746,589995-590150,590379-590629
          Length = 734

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
 Frame = +1

Query: 460 LTIQSLKK*TFFFY*IDKS----NMSKMFFNENTSDIFLTGYL 576
           LT++  KK  F    +D++    N+S + F + T DIF+ GYL
Sbjct: 273 LTLRDFKKMHFLSQVVDETLRCVNISFVSFRQATRDIFVNGYL 315


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,352,814
Number of Sequences: 37544
Number of extensions: 243838
Number of successful extensions: 452
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 452
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)