Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13i19
         (667 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    24   1.1  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          24   1.5  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      24   1.5  
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          24   1.5  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    23   2.0  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    23   2.6  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    23   2.6  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          23   2.6  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   6.0  

>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -1

Query: 64  CVLIVNEICKTCILFRFVAML 2
           CV IV   CKTCI  R   +L
Sbjct: 290 CVNIVTSYCKTCISGRAFQVL 310


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = -1

Query: 325 LIDYYYKWSHSRPRRVMYQIYFLIPGHFYSIRNHVFDDYYEYPFQFQRM 179
           ++DYY+K+  + P+    ++ F  PG   SI +   D    Y   F+ M
Sbjct: 424 ILDYYHKYKENLPKYTTEELNF--PG--VSIESVTVDKLITYFDHFESM 468


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = -1

Query: 325 LIDYYYKWSHSRPRRVMYQIYFLIPGHFYSIRNHVFDDYYEYPFQFQRM 179
           ++DYY+K+  + P+    ++ F  PG   SI +   D    Y   F+ M
Sbjct: 424 ILDYYHKYKENLPKYTTEELNF--PG--VSIESVTVDKLITYFDHFESM 468


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = -1

Query: 325 LIDYYYKWSHSRPRRVMYQIYFLIPGHFYSIRNHVFDDYYEYPFQFQRM 179
           ++DYY+K+  + P+    ++ F  PG   SI +   D    Y   F+ M
Sbjct: 50  ILDYYHKYKENLPKYTTEELNF--PG--VSIESVTVDKLITYFDHFESM 94


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +2

Query: 11  YKTK*NTGLTNFINNKYTSFYKKIKKENF 97
           YK        N+ NN Y ++ KK+  +N+
Sbjct: 322 YKYSNYNNYNNYNNNNYNNYNKKLYYKNY 350


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 12/29 (41%), Positives = 14/29 (48%), Gaps = 3/29 (10%)
 Frame = +2

Query: 26  NTGLTNFINNKYTSFYKKIKKE---NFEQ 103
           N    N  NN Y + YKK+ K    N EQ
Sbjct: 98  NNNYNNNYNNNYNNNYKKLYKNYIINIEQ 126


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 12/29 (41%), Positives = 14/29 (48%), Gaps = 3/29 (10%)
 Frame = +2

Query: 26  NTGLTNFINNKYTSFYKKIKKE---NFEQ 103
           N    N  NN Y + YKK+ K    N EQ
Sbjct: 98  NNNYNNNYNNNYNNNYKKLYKNYIINIEQ 126


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 140 LLSRHTMEWLMRSHALKLKRIFI 208
           L++  T+ WL R+H   LK I I
Sbjct: 34  LITSTTLNWLPRTHYDHLKEIVI 56


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 5/8 (62%), Positives = 7/8 (87%)
 Frame = +1

Query: 601 HHCPRVYR 624
           HHCP +Y+
Sbjct: 474 HHCPEIYK 481


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,193
Number of Sequences: 438
Number of extensions: 3530
Number of successful extensions: 23
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20099475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)