Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13i16
         (610 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2...    67   2e-12
SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces...    27   1.6  
SPAPB18E9.05c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      27   2.8  
SPBC15C4.01c |oca3||TPR repeat protein Oca3|Schizosaccharomyces ...    25   8.7  
SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomy...    25   8.7  

>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 66.9 bits (156), Expect = 2e-12
 Identities = 58/193 (30%), Positives = 88/193 (45%), Gaps = 12/193 (6%)
 Frame = -3

Query: 608 KNRARFGNT-ITGVDLNRNFGLNWGRNGNTECASGDPNHLNYRGTEAFSEPETAAIKDII 432
           KNR    N+   G++L+ N+   +G NGN      DP    Y G   F   ET A+ ++I
Sbjct: 307 KNRQPLNNSECFGINLDANWA--FGFNGNI-----DPCSNEYGGLSPFQANETMALFNLI 359

Query: 431 L--YSGVPFKI--FLTFHAYSELISFPWCYTSDPCP-DYVNLLEGGTAMAKAIYETSGRM 267
               S    K+  FL  H+YS+ + +P+ YT D  P D  N  E    + K ++  + R 
Sbjct: 360 TESLSQEQKKVVGFLDVHSYSQSVLWPYAYTCDLFPPDTENFEELAIGLVKELHRVNSRY 419

Query: 266 YKVGN----FKDI-MYYASGTSIDWSYGTARIPFTYLIELRSKKD-RFLLPKEEIQDCCK 105
           Y        +     +Y  GT+IDW Y  A + + + I LR   D  +LLP ++I    K
Sbjct: 420 YTYQQACIPYDGFHKHYLPGTAIDWVYFAADVAWPFNIRLRDMGDYGYLLPAKQIVPTAK 479

Query: 104 EVLNGVKALAEFV 66
           E    +    EF+
Sbjct: 480 EFFAMILYYGEFI 492


>SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -1

Query: 343 LVRITLIYWKEVPPWLRLFMRRVAECTKSVILKISCTTQV 224
           L+ +T +  K VPP  R   RRVA  T +V  +IS   ++
Sbjct: 55  LISMTELQQKNVPPSSRSPRRRVAGVTNNVTARISSKRKI 94


>SPAPB18E9.05c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 90

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -3

Query: 407 IFLTFHAYSELISFPWCYTSDPC 339
           I+L  H+ +EL+S  W + S  C
Sbjct: 34  IYLVIHSQNELVSMSWLFRSTIC 56


>SPBC15C4.01c |oca3||TPR repeat protein Oca3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 282

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = -3

Query: 131 KEEIQDCCKEVLNGVKALAEFVDKKKCRN-CNVHFKKNPPV 12
           K+EI D  ++V        E V  KKC N  N  F K+P V
Sbjct: 33  KDEIWDVYQKVFIAALTTGETVLAKKCWNRLNDRFHKSPRV 73


>SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 802

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 329 RNPDKDPRYSTMEMILVHCMR 391
           +NP K P  ST E++L  C R
Sbjct: 540 KNPPKHPLSSTAEIVLSSCYR 560


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,671,513
Number of Sequences: 5004
Number of extensions: 57677
Number of successful extensions: 161
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)