Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13i16
         (610 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0141 + 1017654-1017745,1018332-1018389,1018485-1018595,101...    43   2e-04
10_08_0497 - 18336819-18337140,18337226-18337360,18337579-183376...    31   0.94 
01_06_0605 + 30548588-30548732,30549004-30549094,30549470-305495...    30   1.6  
03_01_0516 - 3871658-3872041                                           29   3.8  
01_01_0323 + 2598850-2598924,2599756-2600844,2601352-2602589,260...    28   5.0  
03_02_0023 + 5065962-5066079,5066179-5067614                           27   8.8  

>02_01_0141 +
           1017654-1017745,1018332-1018389,1018485-1018595,
           1018853-1018990,1019559-1019628,1019711-1019766,
           1020203-1020328,1020648-1020787,1020932-1021004,
           1021095-1021169,1021277-1021591
          Length = 417

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 35/139 (25%), Positives = 62/139 (44%), Gaps = 1/139 (0%)
 Frame = -3

Query: 575 GVDLNRNFGLNWGRNGNTECASGDPNHLNYRGTEAFSEPETAAIKDIILYSGVPFKIFLT 396
           GVDLNRN+ ++WG+         DP   N  GT  FSEPE   +++  L       +++ 
Sbjct: 159 GVDLNRNWSVDWGKKEK----DYDPYEEN-PGTAPFSEPEAQIMRE--LSKSFKPHMWVN 211

Query: 395 FHAYSELISFPWCYTSDPCPDYVNLLEGGTAMAKAIYETSGRMYKVGNFKD-IMYYASGT 219
            H+  E +  P+ +  +  P+  +     T +    +        VG+    + Y A GT
Sbjct: 212 VHSGMEALFMPYDH-KNTTPNGASAHLMRTVLENLNHRHFQDSCLVGSGGGAVGYLAHGT 270

Query: 218 SIDWSYGTARIPFTYLIEL 162
           + D+ Y   ++P  +  E+
Sbjct: 271 TTDYMYDIVKVPMPFTFEI 289


>10_08_0497 -
           18336819-18337140,18337226-18337360,18337579-18337673,
           18337759-18337845,18337923-18338129,18338209-18338535,
           18338711-18338803,18338861-18339175,18339283-18339792,
           18339889-18339960,18341209-18341256,18341427-18341551,
           18341640-18341661
          Length = 785

 Score = 30.7 bits (66), Expect = 0.94
 Identities = 17/67 (25%), Positives = 32/67 (47%)
 Frame = -3

Query: 209 WSYGTARIPFTYLIELRSKKDRFLLPKEEIQDCCKEVLNGVKALAEFVDKKKCRNCNVHF 30
           WSY  A    ++L  +R +     +  +  +   K++++ +KA AEFV  K+     + F
Sbjct: 534 WSYSIAFFEMSFLTLVRLQNFCKTVKADRFRREIKDLIHQIKASAEFVSSKR---AGIGF 590

Query: 29  KKNPPVI 9
             N P +
Sbjct: 591 SPNDPAV 597


>01_06_0605 +
           30548588-30548732,30549004-30549094,30549470-30549536,
           30550664-30550778,30550939-30551042
          Length = 173

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
 Frame = -3

Query: 521 ECASGDP--NHLNYRGTEAFSEPETAAIKDIILYSGVPFKIFLTFHAYSELISFPWCYTS 348
           EC   DP    L  RG   FS+     I  I+++ G+P         Y   +S PWC  S
Sbjct: 101 ECWIADPCMKRLPNRGNYVFSDQTLETIGHILVFPGIP-----AGEKYFNQLSKPWCQLS 155


>03_01_0516 - 3871658-3872041
          Length = 127

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -3

Query: 530 GNTECASGDPNHLNYRGTEAFSEPETAAIKDIILYSGVP 414
           G TE A+G     NYR   A ++P+ +A +   L  GVP
Sbjct: 71  GETEAAAGGAGGTNYRLAVAVTKPDGSAAQYECLVWGVP 109


>01_01_0323 + 2598850-2598924,2599756-2600844,2601352-2602589,
            2602637-2602810,2603032-2603098,2603735-2603757,
            2603899-2604001,2604087-2604848,2605098-2605292,
            2605496-2606115,2606429-2606480,2606558-2607197,
            2608366-2608574,2608660-2609189,2609500-2609566,
            2609651-2609728,2610415-2610483,2610569-2610643
          Length = 2021

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +1

Query: 514  AHSVLPFLPQFSPKFLFKSTPVMVFPNRA 600
            A+S+LP  P FS K L K+ P +  P+ A
Sbjct: 1478 ANSILPASPDFSSKSLRKTMPSVQIPSEA 1506


>03_02_0023 + 5065962-5066079,5066179-5067614
          Length = 517

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = -1

Query: 361 GAIPRILVRITLIYWKEVPPWLRLFMRRVAECTKSVILKIS 239
           GA+P I + I ++   E P W  L MR   E  + V+LK S
Sbjct: 188 GAVPPIFLGIAVLAMPESPRW--LVMRGRIEDARRVLLKTS 226


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,452,177
Number of Sequences: 37544
Number of extensions: 339744
Number of successful extensions: 787
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 785
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)