Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13i13
         (591 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier ...    27   2.0  
SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|ch...    27   2.7  
SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pom...    26   3.6  
SPAC5D6.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    26   4.7  
SPBP23A10.06 |||manganese ion transporter |Schizosaccharomyces p...    25   6.2  
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF...    25   8.3  
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp...    25   8.3  

>SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier for
           pyridoxine, pyridoxal, and pyridoxamine
           Bsu1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 526

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -2

Query: 488 TDTDDISDRESEYEERSPEDSPKV 417
           + +D I +  SEY+E+  E+SP+V
Sbjct: 34  SQSDGIHETNSEYDEKKREESPEV 57


>SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 679

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +2

Query: 197 SEKVRCRKALVDIRKGIQW*LLWELLG 277
           SE+V  RK L  +R+G  W L+  LLG
Sbjct: 104 SERVHARKVLKLLRRGKHWVLVTLLLG 130


>SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 772

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -2

Query: 461 ESEYEERSPEDSPKVTKKSL-STVGFRSSPENLNNKPMALRAT 336
           E E E  S       + K+L S++    S  NLNNKP++L +T
Sbjct: 298 EPEVETYSVSTKNSSSNKNLRSSLSKLLSTSNLNNKPLSLSST 340


>SPAC5D6.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 314

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -2

Query: 491 YTDTDDISDRESEYEERSPEDSPKVTKKSLSTV 393
           Y  +D + +  + Y+  SP DSP+  +  L T+
Sbjct: 104 YPLSDQVENSSNIYDPSSPPDSPRKQQTHLGTI 136


>SPBP23A10.06 |||manganese ion transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 335

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
 Frame = -2

Query: 164 VSPEVLNYHGYSFEPNQIAM-FWKKDCRKFLWKG 66
           VS      HG++    Q  +  WK+   K LWKG
Sbjct: 269 VSKTAKQVHGHTLTRGQFMLTLWKRGGPKALWKG 302


>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
           eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 918

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 13/48 (27%), Positives = 20/48 (41%)
 Frame = -2

Query: 485 DTDDISDRESEYEERSPEDSPKVTKKSLSTVGFRSSPENLNNKPMALR 342
           +++  S+ ESE EE S  +      +      F   PE    KP  L+
Sbjct: 105 ESESESESESESEEESESEEESDESERSGPSSFLKKPEKEEAKPAGLK 152


>SPBC3B9.15c |scp1||sterol regulatory element binding protein
           Scp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = -2

Query: 227 LRPCGNGPFRTREKNTLALHVVSPEVLNYHGYSFEPN-QIAMFWKKDCRK 81
           L P GN      +     L+V SP ++  H Y  +PN ++ +FW     K
Sbjct: 647 LDPQGNYVSLFSKDTLFILNVESPCLMLQHSYHCKPNSKLNVFWMPGTHK 696


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,387,628
Number of Sequences: 5004
Number of extensions: 49469
Number of successful extensions: 144
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)