Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13i10
         (771 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26H5.06 |pot1||telomere end-binding protein Pot1 |Schizosacc...    28   1.3  
SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein 2|S...    27   3.9  

>SPAC26H5.06 |pot1||telomere end-binding protein Pot1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 555

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = +3

Query: 627 RARGPVGRGCSLCVLSRLWDRADLYC 704
           R RGP GR    C+L   WD  D YC
Sbjct: 253 RWRGPFGRFSIRCIL---WDEHDFYC 275


>SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein
           2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = -1

Query: 315 FTLCYVI*NSTNHSAVWFIICVY*LGFVTCSRSFEVCP 202
           + +CY+I N+ N   +    C    G  TC R  E  P
Sbjct: 174 YGMCYIIRNNANRILLESCYCENSTGMSTCPRILEFMP 211


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,533,398
Number of Sequences: 5004
Number of extensions: 49182
Number of successful extensions: 107
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)