Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13i10
         (771 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          22   7.3  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      22   7.3  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   7.3  
DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein ...    21   9.6  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   9.6  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   9.6  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   9.6  
AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein ...    21   9.6  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +2

Query: 368 FTLYTLVTCRTDTKY 412
           ++LYT V  R DTK+
Sbjct: 142 YSLYTAVITRPDTKF 156


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +2

Query: 368 FTLYTLVTCRTDTKY 412
           ++LYT V  R DTK+
Sbjct: 142 YSLYTAVITRPDTKF 156


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 7/21 (33%), Positives = 10/21 (47%)
 Frame = +1

Query: 94  CKYESPSL*CCNCTDLKTTFC 156
           C+YE+     C+C D     C
Sbjct: 737 CRYEAHCFALCHCCDFDACDC 757


>DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein 2
           protein.
          Length = 117

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 17/39 (43%), Positives = 18/39 (46%)
 Frame = +3

Query: 600 RNLSCALARRARGPVGRGCSLCVLSRLWDRADLYCPCCS 716
           R L CAL      PVGR   L  L+ L  R    CP CS
Sbjct: 50  RQLKCALGEAPCDPVGR--RLKSLAPLVLRG--ACPQCS 84


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = +3

Query: 615 ALARRARGPVGRGCSLCVLSRLWDRADLY 701
           A+ RR +      C+LC    + D  D+Y
Sbjct: 206 AINRRLKETYSNMCALCEKPEVCDYPDIY 234


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = +3

Query: 615 ALARRARGPVGRGCSLCVLSRLWDRADLY 701
           A+ RR +      C+LC    + D  D+Y
Sbjct: 206 AINRRLKETYSNMCALCEKPEVCDYPDIY 234


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = +3

Query: 615 ALARRARGPVGRGCSLCVLSRLWDRADLY 701
           A+ RR +      C+LC    + D  D+Y
Sbjct: 206 AINRRLKETYSNMCALCEKPEVCDYPDIY 234


>AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein
           protein.
          Length = 117

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 17/39 (43%), Positives = 18/39 (46%)
 Frame = +3

Query: 600 RNLSCALARRARGPVGRGCSLCVLSRLWDRADLYCPCCS 716
           R L CAL      PVGR   L  L+ L  R    CP CS
Sbjct: 50  RQLKCALGEAPCDPVGR--RLKSLAPLVLRG--ACPQCS 84


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,500
Number of Sequences: 438
Number of extensions: 3244
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24154023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)