Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13i09
         (321 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr...    26   1.2  
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc...    24   6.6  
SPCC1322.02 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    23   8.7  

>SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 506

 Score = 26.2 bits (55), Expect = 1.2
 Identities = 9/37 (24%), Positives = 20/37 (54%)
 Frame = -2

Query: 278 IREMLWQVLPTFVIFGVQFLTGFRAPLGDGQTQRRFK 168
           +  ++W +  + + FG+   +    PL D ++ RRF+
Sbjct: 308 LNSLVWNIKLSLINFGILSPSASSTPLTDSESYRRFE 344


>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1238

 Score = 23.8 bits (49), Expect = 6.6
 Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +1

Query: 196 PSGARKPVKNWTPNI-TNVGKTCQSIS 273
           PS    PVK+ +PN+  N  KT  S++
Sbjct: 201 PSNKSSPVKHVSPNVKNNSKKTASSVN 227


>SPCC1322.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 351

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 205 PHLVMARLKEDSNIKACKRKF 143
           P L+ A + EDS ++  KR+F
Sbjct: 121 PLLMTASVSEDSRVRVSKRQF 141


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,394,691
Number of Sequences: 5004
Number of extensions: 27595
Number of successful extensions: 48
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 88030718
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)