Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13i09
         (321 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93778-8|CAB07848.4|  437|Caenorhabditis elegans Hypothetical pr...    47   3e-06
AL034364-5|CAA22255.4|  437|Caenorhabditis elegans Hypothetical ...    47   3e-06
AF136150-1|AAF61419.1|  437|Caenorhabditis elegans homogentisate...    47   3e-06
U95181-1|AAD00776.1|  437|Caenorhabditis elegans 2,5 dihydroxyph...    46   8e-06
U23139-10|AAN65328.1|  558|Caenorhabditis elegans Biotin protein...    27   3.0  
U23139-9|AAN65327.1|  632|Caenorhabditis elegans Biotin protein ...    27   3.0  
U23139-8|AAK31491.2| 1051|Caenorhabditis elegans Biotin protein ...    27   3.0  
AY601658-1|AAS98223.1|  558|Caenorhabditis elegans biotin protei...    27   3.0  
AY601657-1|AAS98222.1|  558|Caenorhabditis elegans biotin protei...    27   3.0  
AY601656-1|AAS98221.1|  632|Caenorhabditis elegans biotin protei...    27   3.0  
AF024500-2|AAB70360.1|  467|Caenorhabditis elegans Hypothetical ...    27   4.0  
AF000266-7|AAC71173.1|  212|Caenorhabditis elegans Hypothetical ...    25   9.2  

>Z93778-8|CAB07848.4|  437|Caenorhabditis elegans Hypothetical
           protein W06D4.1 protein.
          Length = 437

 Score = 46.8 bits (106), Expect = 3e-06
 Identities = 21/39 (53%), Positives = 27/39 (69%)
 Frame = +3

Query: 159 AFMFESSLSLAITKWGAETCQKLDPKYYECWQNLPKHFS 275
           +FMFESSL++AIT W     Q +D  YY+ WQ L KHF+
Sbjct: 398 SFMFESSLNMAITNWA--VYQNVDKDYYKDWQPLKKHFT 434


>AL034364-5|CAA22255.4|  437|Caenorhabditis elegans Hypothetical
           protein W06D4.1 protein.
          Length = 437

 Score = 46.8 bits (106), Expect = 3e-06
 Identities = 21/39 (53%), Positives = 27/39 (69%)
 Frame = +3

Query: 159 AFMFESSLSLAITKWGAETCQKLDPKYYECWQNLPKHFS 275
           +FMFESSL++AIT W     Q +D  YY+ WQ L KHF+
Sbjct: 398 SFMFESSLNMAITNWA--VYQNVDKDYYKDWQPLKKHFT 434


>AF136150-1|AAF61419.1|  437|Caenorhabditis elegans homogentisate
           1,2-dioxygenase protein.
          Length = 437

 Score = 46.8 bits (106), Expect = 3e-06
 Identities = 21/39 (53%), Positives = 27/39 (69%)
 Frame = +3

Query: 159 AFMFESSLSLAITKWGAETCQKLDPKYYECWQNLPKHFS 275
           +FMFESSL++AIT W     Q +D  YY+ WQ L KHF+
Sbjct: 398 SFMFESSLNMAITNWA--VYQNVDKDYYKDWQPLKKHFT 434


>U95181-1|AAD00776.1|  437|Caenorhabditis elegans 2,5
           dihydroxyphenylacetate oxidase protein.
          Length = 437

 Score = 45.6 bits (103), Expect = 8e-06
 Identities = 20/39 (51%), Positives = 27/39 (69%)
 Frame = +3

Query: 159 AFMFESSLSLAITKWGAETCQKLDPKYYECWQNLPKHFS 275
           +FMFESSL++AIT W     Q +D  YY+ WQ L KH++
Sbjct: 398 SFMFESSLNMAITNWA--VYQNVDKDYYKDWQPLKKHYT 434


>U23139-10|AAN65328.1|  558|Caenorhabditis elegans Biotin protein
           ligase protein 1,isoform c protein.
          Length = 558

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +3

Query: 243 ECWQNLPKHFSDKAKV*FYSQNKIL 317
           E W+ +  +F+   K+ F  QNK+L
Sbjct: 68  EAWEKIQAYFNQNGKIIFVCQNKLL 92


>U23139-9|AAN65327.1|  632|Caenorhabditis elegans Biotin protein
           ligase protein 1,isoform b protein.
          Length = 632

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +3

Query: 243 ECWQNLPKHFSDKAKV*FYSQNKIL 317
           E W+ +  +F+   K+ F  QNK+L
Sbjct: 142 EAWEKIQAYFNQNGKIIFVCQNKLL 166


>U23139-8|AAK31491.2| 1051|Caenorhabditis elegans Biotin protein
           ligase protein 1,isoform a protein.
          Length = 1051

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +3

Query: 243 ECWQNLPKHFSDKAKV*FYSQNKIL 317
           E W+ +  +F+   K+ F  QNK+L
Sbjct: 561 EAWEKIQAYFNQNGKIIFVCQNKLL 585


>AY601658-1|AAS98223.1|  558|Caenorhabditis elegans biotin protein
           ligase, holocarboxylasesynthetase (62.5 kD) alternative
           variant d protein.
          Length = 558

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +3

Query: 243 ECWQNLPKHFSDKAKV*FYSQNKIL 317
           E W+ +  +F+   K+ F  QNK+L
Sbjct: 68  EAWEKIQAYFNQNGKIIFVCQNKLL 92


>AY601657-1|AAS98222.1|  558|Caenorhabditis elegans biotin protein
           ligase, holocarboxylasesynthetase (62.5 kD) alternative
           variant c protein.
          Length = 558

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +3

Query: 243 ECWQNLPKHFSDKAKV*FYSQNKIL 317
           E W+ +  +F+   K+ F  QNK+L
Sbjct: 68  EAWEKIQAYFNQNGKIIFVCQNKLL 92


>AY601656-1|AAS98221.1|  632|Caenorhabditis elegans biotin protein
           ligase, holocarboxylasesynthetase (70.9 kD) alternative
           variant b protein.
          Length = 632

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +3

Query: 243 ECWQNLPKHFSDKAKV*FYSQNKIL 317
           E W+ +  +F+   K+ F  QNK+L
Sbjct: 142 EAWEKIQAYFNQNGKIIFVCQNKLL 166


>AF024500-2|AAB70360.1|  467|Caenorhabditis elegans Hypothetical
           protein K06H6.4 protein.
          Length = 467

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +3

Query: 12  YNKSSCSNRYLHQYKNEI*HKFKKII*SNSSRACILNPN 128
           YN S+   RY    + EI   F+ +I   S+  C L PN
Sbjct: 109 YNSSTMYCRYYDCRRREISDPFQNVIFHKSTVFCALRPN 147


>AF000266-7|AAC71173.1|  212|Caenorhabditis elegans Hypothetical
           protein W08F4.9 protein.
          Length = 212

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -2

Query: 200 LGDGQTQRRFKHKSL*KEILMLTSIWIQNA 111
           L + +T R   H    K++ +   IWIQN+
Sbjct: 110 LSNSRTLRSLHHSMTAKDVNLFLKIWIQNS 139


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,664,977
Number of Sequences: 27780
Number of extensions: 153559
Number of successful extensions: 360
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 349
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 356
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 376873630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)