Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13i07
         (491 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81047-4|CAB02831.3|  364|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z49073-4|CAA88889.1| 1143|Caenorhabditis elegans Hypothetical pr...    29   2.4  
U64849-8|AAC48047.2|  376|Caenorhabditis elegans Hypothetical pr...    28   4.2  
Z49966-5|CAA90245.1|  445|Caenorhabditis elegans Hypothetical pr...    27   7.4  
Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical p...    27   9.8  
AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical ...    27   9.8  
AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha...    27   9.8  

>Z81047-4|CAB02831.3|  364|Caenorhabditis elegans Hypothetical
           protein C41G6.6 protein.
          Length = 364

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 13/41 (31%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = -1

Query: 242 DLLLPSHGQKIASELNAAILKMENQEY-TNPKLCSLLRMIL 123
           D  +PS  +  +S +NA + K  N+++  +PK+C  ++M L
Sbjct: 307 DFSIPSLKKIRSSTMNAVVFKKNNEKFMADPKICFGIKMAL 347


>Z49073-4|CAA88889.1| 1143|Caenorhabditis elegans Hypothetical
           protein ZK970.5 protein.
          Length = 1143

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 15/39 (38%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
 Frame = +1

Query: 37  YFGCPIVALARSV-ILGYLMLCLSSSL*DHRIMRRRLHS 150
           Y    IVA+A ++ IL  +++C+SS + + R+ + RLHS
Sbjct: 494 YRALVIVAIAVTILILLAIIICMSSKIRNRRVEQSRLHS 532


>U64849-8|AAC48047.2|  376|Caenorhabditis elegans Hypothetical
           protein K04A8.1 protein.
          Length = 376

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
 Frame = -1

Query: 323 NDANALTELERSLALLAFPDPHTS-PFADLLLPSH-GQKIASELNAAILKMENQEYTNP 153
           ND+N++  L+ S++ +  PDP  +    +  + ++ G     ELN  + K    E T P
Sbjct: 33  NDSNSVRSLKNSISRIKLPDPFPAVNLKEYKIKTYRGYVSMDELNENVFKKFGYEITRP 91


>Z49966-5|CAA90245.1|  445|Caenorhabditis elegans Hypothetical
           protein F35C11.5 protein.
          Length = 445

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 223 TVKRLQVNSMRLYSKWRIKNIQIQSCA 143
           TV +++ + M LYSK    NI + SCA
Sbjct: 298 TVPKMESDFMNLYSKCPYANITLASCA 324


>Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical
           protein T22A3.8 protein.
          Length = 3102

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 13/42 (30%), Positives = 17/42 (40%)
 Frame = -3

Query: 399 FGADSCRTC*RGISLCKCNARRGWCQ*CQCSD*TREVIGFTG 274
           F  +SC +C  G          G C+ C C   + E   FTG
Sbjct: 747 FAGNSCESCVPGYRRVNNQLYGGRCEKCDCHGNSEECDPFTG 788


>AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical
           protein T22A3.8 protein.
          Length = 3102

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 13/42 (30%), Positives = 17/42 (40%)
 Frame = -3

Query: 399 FGADSCRTC*RGISLCKCNARRGWCQ*CQCSD*TREVIGFTG 274
           F  +SC +C  G          G C+ C C   + E   FTG
Sbjct: 747 FAGNSCESCVPGYRRVNNQLYGGRCEKCDCHGNSEECDPFTG 788


>AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha
           chain protein.
          Length = 3102

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 13/42 (30%), Positives = 17/42 (40%)
 Frame = -3

Query: 399 FGADSCRTC*RGISLCKCNARRGWCQ*CQCSD*TREVIGFTG 274
           F  +SC +C  G          G C+ C C   + E   FTG
Sbjct: 747 FAGNSCESCVPGYRRVNNQLYGGRCEKCDCHGNSEECDPFTG 788


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,378,939
Number of Sequences: 27780
Number of extensions: 191680
Number of successful extensions: 657
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 657
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 924715866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)