Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13i07
         (491 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    24   0.76 
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   3.1  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   7.1  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   9.4  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   9.4  

>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 24.2 bits (50), Expect = 0.76
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 309 SIGIIGTSLCERCTCKG*CLFS 374
           S  I+  ++ ERC  K  CLFS
Sbjct: 131 STTIVSGAMAERCNFKAYCLFS 152


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +2

Query: 92  CCACPAHSETTGSCEEDC 145
           C ACPAHS+++     +C
Sbjct: 279 CEACPAHSKSSDYGFTEC 296


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +1

Query: 418 DPPINKNCRTSN 453
           DPPI   C+T N
Sbjct: 430 DPPIGCECKTCN 441


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 7/24 (29%), Positives = 13/24 (54%)
 Frame = -2

Query: 472 EIETLNSLKFCNFCLLEDPTLNYN 401
           ++     +K   F L+ +PT NY+
Sbjct: 167 QVAIAEDMKLSQFDLVANPTANYS 190


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 8/19 (42%), Positives = 8/19 (42%)
 Frame = +2

Query: 311 HWHHWHQPLRALHLQRLMP 367
           H HH HQ     HL    P
Sbjct: 351 HHHHHHQTQSLQHLHYRQP 369


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,360
Number of Sequences: 438
Number of extensions: 2158
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13544190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)