Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13i03
         (349 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    23   1.4  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    20   7.3  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    20   7.3  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    20   7.3  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    20   7.3  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    20   9.6  

>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.6 bits (46), Expect = 1.4
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = -3

Query: 164 IQTQS--AKGSLARLMALKPLIKTEKRRDLTDHRYNQEK 54
           I+T S   KGS+AR  +L     +++   LT H+  + K
Sbjct: 201 IETDSDRRKGSIARCWSLDSTAASDEDISLTTHQQKRHK 239


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic
          acetylcholine receptor alpha6subunit protein.
          Length = 529

 Score = 20.2 bits (40), Expect = 7.3
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -3

Query: 38 VHSCVNFGICFI 3
          V SCV FG+ F+
Sbjct: 13 VSSCVIFGVLFV 24


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic
          acetylcholine receptor alpha6subunit protein.
          Length = 529

 Score = 20.2 bits (40), Expect = 7.3
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -3

Query: 38 VHSCVNFGICFI 3
          V SCV FG+ F+
Sbjct: 13 VSSCVIFGVLFV 24


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 20.2 bits (40), Expect = 7.3
 Identities = 12/65 (18%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
 Frame = -3

Query: 230 SSCTKRISRTRKTLCSTFYQYQIQTQSAKGSLARLMALKP-LIKTEKRRDLTDHRYNQEK 54
           S   +R  R+ K   S     +   + ++  + R  + +P +I +     + ++ YN++ 
Sbjct: 273 SRSREREQRSYKNENSYRKYRETSKERSRDRIERERSREPKIISSLSNNTIHNNNYNKKL 332

Query: 53  YYHVV 39
           YY+++
Sbjct: 333 YYNII 337


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 20.2 bits (40), Expect = 7.3
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +3

Query: 192 SFSSSRNPL 218
           SFS SRNPL
Sbjct: 503 SFSGSRNPL 511


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 19.8 bits (39), Expect = 9.6
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 210 FSN*KNFMFYILSIPN 163
           F N K   F+ +SIPN
Sbjct: 94  FKNAKKVTFHEMSIPN 109


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,508
Number of Sequences: 438
Number of extensions: 1196
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  7936320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)