Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13i02
         (697 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    28   1.5  
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ...    26   5.9  
SPAC26H5.07c |||seven transmembrane receptor-like protein|Schizo...    25   7.8  
SPCC11E10.05c |ynd1||nucleoside diphosphatase |Schizosaccharomyc...    25   7.8  

>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = -2

Query: 504 FRNVIFSFN-SYMKLFR*ITNHYFKSNFVLSVSFSFIAKFCFIHYFIILVGS 352
           F N +  F  S + LFR +   +F   F LS SFSF   F     FI+   S
Sbjct: 98  FPNFLHPFTGSELSLFRCLLLFFFFLLFFLSFSFSFSFLFFLSQIFIVYFSS 149


>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1337

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 8/34 (23%), Positives = 18/34 (52%)
 Frame = -3

Query: 356 GAKKVAKVRIHHVH*CNTTYDYSSKNCFILRSHY 255
           G  ++  +++H+ H     ++Y  + CF +R  Y
Sbjct: 757 GRDRLKLIKLHYDHLSQALHEYEREKCFDVRKPY 790


>SPAC26H5.07c |||seven transmembrane receptor-like
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 505

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = -2

Query: 405 SFIAKFCFIHYFIILVGSQKSCQSKD 328
           + +   CF+H+FI+     KS  ++D
Sbjct: 7   ALVGFICFLHFFIVNASDNKSLLTED 32


>SPCC11E10.05c |ynd1||nucleoside diphosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 572

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 86  NKIHFLCFRLTWPLNAFITNF 148
           NK+  LCF+ +W LN     F
Sbjct: 365 NKLEKLCFKASWALNVLHEGF 385


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,734,469
Number of Sequences: 5004
Number of extensions: 54792
Number of successful extensions: 104
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)