Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13i02
         (697 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81132-1|CAB03430.1|  361|Caenorhabditis elegans Hypothetical pr...    30   1.4  
Z83129-3|CAB05641.1|  300|Caenorhabditis elegans Hypothetical pr...    28   5.5  
U55364-13|AAM29677.1|  250|Caenorhabditis elegans Hypothetical p...    27   9.7  
U55364-12|AAA97977.2|  260|Caenorhabditis elegans Hypothetical p...    27   9.7  

>Z81132-1|CAB03430.1|  361|Caenorhabditis elegans Hypothetical
           protein T26E4.1 protein.
          Length = 361

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 19/56 (33%), Positives = 30/56 (53%)
 Frame = -2

Query: 687 TNVNIFGSLGLLFHIITKYVLIFIENCPNIHV*CMFKLNVSRYKIINIRIGTVNNN 520
           TN++   SL  ++H+  K  +I IEN PN+       L V++  + N +I   NNN
Sbjct: 263 TNIDFLESLKYIYHLDDKSAVIQIENNPNLSNFSFPSLVVAQ-TLANTKILFSNNN 317


>Z83129-3|CAB05641.1|  300|Caenorhabditis elegans Hypothetical
           protein W06G6.6 protein.
          Length = 300

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -3

Query: 449 LIIILNRTLYYLCRFHSLLNFVSFIISLFWW 357
           L +IL R L++L      +N  SFI  +F+W
Sbjct: 64  LQVILERGLWFLTHDSPCINLHSFIFEMFFW 94


>U55364-13|AAM29677.1|  250|Caenorhabditis elegans Hypothetical
           protein F21C10.3b protein.
          Length = 250

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -2

Query: 444 HYFKSNFVLSVSFSFIAKFCFIHYF 370
           H F   F L+  F FIA  CFI Y+
Sbjct: 193 HDFNQWFELAFVFGFIAVMCFIAYY 217


>U55364-12|AAA97977.2|  260|Caenorhabditis elegans Hypothetical
           protein F21C10.3a protein.
          Length = 260

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -2

Query: 444 HYFKSNFVLSVSFSFIAKFCFIHYF 370
           H F   F L+  F FIA  CFI Y+
Sbjct: 193 HDFNQWFELAFVFGFIAVMCFIAYY 217


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,836,009
Number of Sequences: 27780
Number of extensions: 294450
Number of successful extensions: 651
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 651
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)