Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13i02
         (697 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    23   2.1  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           23   2.1  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   4.8  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   8.5  

>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 13/57 (22%), Positives = 27/57 (47%)
 Frame = -2

Query: 474 YMKLFR*ITNHYFKSNFVLSVSFSFIAKFCFIHYFIILVGSQKSCQSKDSSRPLMQY 304
           ++++ R I N+YF+SN +   +   +       +FI         Q+K + +P+  Y
Sbjct: 383 HVEVARLIRNYYFESNKIDETTLKHLIDVASDRFFITDGEKAARMQAKVNRQPVWFY 439


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 13/57 (22%), Positives = 27/57 (47%)
 Frame = -2

Query: 474 YMKLFR*ITNHYFKSNFVLSVSFSFIAKFCFIHYFIILVGSQKSCQSKDSSRPLMQY 304
           ++++ R I N+YF+SN +   +   +       +FI         Q+K + +P+  Y
Sbjct: 383 HVEVARLIRNYYFESNKIDETTLKHLIDVASDRFFITDGEKAARMQAKVNRQPVWFY 439


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -1

Query: 199 VILDVSLPICWYYSITCKICD 137
           ++L V L ICW    TC I D
Sbjct: 623 IVLGVFL-ICWLPFFTCNIMD 642


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -2

Query: 150 VKFVMKAFNGQVNRKHKKCILF 85
           VKF  K F   ++R+ K  +LF
Sbjct: 453 VKFTSKLFGRALSRRIKATVLF 474


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,946
Number of Sequences: 438
Number of extensions: 3988
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)