Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13h24
         (615 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr ...    26   3.8  
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    26   3.8  
SPAC6F6.04c |||membrane transporter |Schizosaccharomyces pombe|c...    25   6.6  
SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces po...    25   8.7  
SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|...    25   8.7  
SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2...    25   8.7  

>SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 664

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +2

Query: 83  FISVPVFVDFRENKKDREHHQSEHYQDKHNVNEYGVVARLVV 208
           F ++ +FV +   K + E+  SEH+    +    G+VA  VV
Sbjct: 22  FAALMIFVSWSLKKFNNENQTSEHFNTASHSVRTGLVASAVV 63


>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1036

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -1

Query: 93  TLINECVNSTQKYPGNGIKIRLQGSIC 13
           TL + C   ++KYP NGI  +  G  C
Sbjct: 62  TLEHLCFMGSKKYPMNGILTKFAGRAC 88


>SPAC6F6.04c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 489

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 10/22 (45%), Positives = 18/22 (81%)
 Frame = -3

Query: 178 IHIMFVLIVFALMMLAILFIFS 113
           ++I+F++I+   ++LAILFI S
Sbjct: 187 VYIIFIIIMACAVLLAILFIKS 208


>SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 596

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = -1

Query: 591 VSTSMGSVISLSLTPANVYKLQDNIDGI 508
           VSTS    I   LTPA   KL D++ GI
Sbjct: 81  VSTSAKCYIPPVLTPAKEPKLGDDVSGI 108


>SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 664

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
 Frame = -1

Query: 465 AYKNTAHVPNSIMKKDFYRKIRLN*KRQYEMVT--SMLT*QRCLATDTPKPLEKFQSRNA 292
           +Y +  HVP  +M K+F+  I  +  +    +    +L    C     P  LE+   +  
Sbjct: 60  SYSDIFHVPQDVM-KEFFTLIESSSNQPLRQIQFFVLLALVACYQLGVPSTLEQIFKQRN 118

Query: 291 VLSYLRR 271
           VL  L+R
Sbjct: 119 VLPILQR 125


>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = -3

Query: 265 NRELERISNDAQWCFRGNDYYKPCNN 188
           N E   I+ DA W F  N    PC+N
Sbjct: 314 NSECFGINLDANWAFGFNGNIDPCSN 339


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,606,862
Number of Sequences: 5004
Number of extensions: 54446
Number of successful extensions: 164
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)