Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13h24
(615 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1613 + 38643833-38643974,38644054-38644190,38644828-386452... 30 1.7
05_01_0334 - 2642998-2643063,2643125-2643169,2643552-2643617,264... 29 2.2
01_06_0453 + 29501600-29502403 29 2.2
05_07_0027 + 27140626-27141457,27143101-27143901,27144838-271448... 28 5.1
12_02_0986 + 25055674-25056571,25057741-25057782,25058651-25059888 28 6.8
09_06_0228 + 21706118-21706252,21706327-21706406,21706742-217068... 28 6.8
07_02_0019 + 11877119-11879984,11880316-11880389,11881293-118815... 28 6.8
07_03_0844 - 21971222-21971635 27 8.9
04_04_1146 + 31249488-31249722,31250145-31250236,31251158-312512... 27 8.9
02_04_0304 + 21860661-21860784,21861435-21862044,21862557-218627... 27 8.9
>01_06_1613 +
38643833-38643974,38644054-38644190,38644828-38645207,
38645487-38645583,38645685-38645972,38646683-38647648
Length = 669
Score = 29.9 bits (64), Expect = 1.7
Identities = 16/57 (28%), Positives = 24/57 (42%)
Frame = +2
Query: 104 VDFRENKKDREHHQSEHYQDKHNVNEYGVVARLVVIVAPEAPLRVIRDSLQLTIQMR 274
V RE K + Y +KH N GV+ L I A ++ DSL + ++
Sbjct: 373 VHVREKKVQKAEEVLSQYAEKHPENSKGVLLSLAQIAASANHFQIAADSLSKIVDIQ 429
>05_01_0334 - 2642998-2643063,2643125-2643169,2643552-2643617,
2643625-2643730,2643770-2644349,2645780-2645871,
2645969-2646035,2646126-2646231,2646628-2646708,
2646789-2647058,2647158-2648788,2648834-2649385,
2650602-2651324,2651451-2651526
Length = 1486
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +2
Query: 131 REHHQSEHYQDKHNVNEYGVVARLVVI 211
R H S HY D N NEYG L+ +
Sbjct: 1399 RISHPSRHYDDVSNTNEYGYNMNLIEV 1425
>01_06_0453 + 29501600-29502403
Length = 267
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +2
Query: 113 RENKKDREHHQSEHYQDKHNVNEYGVVARLVVIVAPEAPLRVIRDS 250
R + + R+HH EHY+ +H+ + + R AP P + R S
Sbjct: 42 RASHRRRQHHHDEHYKAQHHHDHHDEPQRCHDQYAPPPPAPLERTS 87
>05_07_0027 +
27140626-27141457,27143101-27143901,27144838-27144873,
27145133-27145420,27145836-27146289,27146520-27146964
Length = 951
Score = 28.3 bits (60), Expect = 5.1
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +2
Query: 128 DREHHQSEHYQDKHNVNEYGVVARLVVIVAPEAPLRVIRDSLQLTI 265
D E+HQ DK +V +GVV LV +++ + + V RD ++ +
Sbjct: 807 DPEYHQCYQLTDKSDVYSFGVV--LVELISSKPAVDVTRDRDEINL 850
>12_02_0986 + 25055674-25056571,25057741-25057782,25058651-25059888
Length = 725
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +2
Query: 128 DREHHQSEHYQDKHNVNEYGVV 193
D E+HQ+ H DK +V +GVV
Sbjct: 552 DPEYHQNFHLSDKSDVYSFGVV 573
>09_06_0228 +
21706118-21706252,21706327-21706406,21706742-21706866,
21706960-21707084,21707162-21707380,21707458-21707580,
21707661-21707761,21707847-21707899,21707972-21708174
Length = 387
Score = 27.9 bits (59), Expect = 6.8
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
Frame = +2
Query: 119 NKKDREHHQSEHYQDKHNVNEY-GVVARLV-----VIVAPEAPLRVIRDSLQL 259
N KD HH E ++ G V LV +++ APLRVI+DS+QL
Sbjct: 249 NLKDTIHHVVEELMAPPTLSAILGFVFGLVPWLKSLVIGDGAPLRVIQDSIQL 301
>07_02_0019 + 11877119-11879984,11880316-11880389,11881293-11881511,
11881557-11881679,11881759-11881859,11881938-11881990,
11882084-11882269,11882677-11882894
Length = 1279
Score = 27.9 bits (59), Expect = 6.8
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
Frame = +2
Query: 119 NKKDREHHQSEHYQDKHNVNEY-GVVARLV-----VIVAPEAPLRVIRDSLQL 259
N KD HH E ++ G V LV +++ APLRVI+DS+QL
Sbjct: 1074 NLKDTIHHVVEELMAPPTLSAILGFVFGLVPWLKSLVIGDGAPLRVIQDSIQL 1126
>07_03_0844 - 21971222-21971635
Length = 137
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -3
Query: 262 RELERISNDAQWCFRGNDYYKPCNNTVFIHIM 167
+ELER A WC + N+ ++P + +HI+
Sbjct: 79 QELERACKVACWCIQDNEAHRPTMQQI-VHIL 109
>04_04_1146 +
31249488-31249722,31250145-31250236,31251158-31251209,
31251377-31251477,31251587-31252020,31252453-31252507,
31252614-31252667,31252774-31253190
Length = 479
Score = 27.5 bits (58), Expect = 8.9
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +1
Query: 352 LCKHRCHHFVLTFLVQSNFP 411
L KH HF+ TF +Q N P
Sbjct: 217 LSKHEASHFIYTFTLQYNLP 236
>02_04_0304 +
21860661-21860784,21861435-21862044,21862557-21862771,
21863072-21863192,21863660-21863772,21863877-21864106,
21864428-21864543,21864675-21864773,21865394-21865639,
21866091-21866190,21866280-21866486,21866584-21866805
Length = 800
Score = 27.5 bits (58), Expect = 8.9
Identities = 15/66 (22%), Positives = 36/66 (54%)
Frame = -1
Query: 612 DWPFEEDVSTSMGSVISLSLTPANVYKLQDNIDGIHTKRIFTLVNLLARAYKNTAHVPNS 433
D+ E +++SM S ++ + N + DN++GI + + L+ R Y ++++ +S
Sbjct: 705 DYARLEQIASSMCSKLATKILAQNGGSM-DNVEGIDQEVDVEMKELIQRVYGSSSNDVSS 763
Query: 432 IMKKDF 415
+ ++ F
Sbjct: 764 VTRQTF 769
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,515,176
Number of Sequences: 37544
Number of extensions: 296827
Number of successful extensions: 816
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 814
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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