Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13h24
         (615 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC006108-1|AAH06108.1|  931|Homo sapiens G patch domain containi...    31   2.4  
AL834465-1|CAD39124.1|  932|Homo sapiens hypothetical protein pr...    31   2.4  
AF434677-1|AAN63596.1|  931|Homo sapiens evolutionarily conserve...    31   2.4  
AF263918-1|AAF73293.1|  910|Homo sapiens inner nuclear membrane ...    30   7.5  
AF112299-1|AAD31593.2|  911|Homo sapiens integral inner nuclear ...    30   7.5  

>BC006108-1|AAH06108.1|  931|Homo sapiens G patch domain containing
           1 protein.
          Length = 931

 Score = 31.5 bits (68), Expect = 2.4
 Identities = 13/52 (25%), Positives = 28/52 (53%)
 Frame = +2

Query: 53  GYFCVLFTHSFISVPVFVDFRENKKDREHHQSEHYQDKHNVNEYGVVARLVV 208
           GYF  + +    +   FV  R+N+ D+     E + D+ +++E+G+  + +V
Sbjct: 60  GYFNTVGSKEGWTPSTFVSSRQNRADKSVLGPEDFMDEEDLSEFGIAPKAIV 111


>AL834465-1|CAD39124.1|  932|Homo sapiens hypothetical protein
           protein.
          Length = 932

 Score = 31.5 bits (68), Expect = 2.4
 Identities = 13/52 (25%), Positives = 28/52 (53%)
 Frame = +2

Query: 53  GYFCVLFTHSFISVPVFVDFRENKKDREHHQSEHYQDKHNVNEYGVVARLVV 208
           GYF  + +    +   FV  R+N+ D+     E + D+ +++E+G+  + +V
Sbjct: 61  GYFNTVGSKEGWTPSTFVSSRQNRADKSVLGPEDFMDEEDLSEFGIAPKAIV 112


>AF434677-1|AAN63596.1|  931|Homo sapiens evolutionarily conserved
           G-patch domain containing protein protein.
          Length = 931

 Score = 31.5 bits (68), Expect = 2.4
 Identities = 13/52 (25%), Positives = 28/52 (53%)
 Frame = +2

Query: 53  GYFCVLFTHSFISVPVFVDFRENKKDREHHQSEHYQDKHNVNEYGVVARLVV 208
           GYF  + +    +   FV  R+N+ D+     E + D+ +++E+G+  + +V
Sbjct: 60  GYFNTVGSKEGWTPSTFVSSRQNRADKSVLGPEDFMDEEDLSEFGIAPKAIV 111


>AF263918-1|AAF73293.1|  910|Homo sapiens inner nuclear membrane
           protein protein.
          Length = 910

 Score = 29.9 bits (64), Expect = 7.5
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = +3

Query: 492 ISFWCVFRRYYLEVYKRLLVL 554
           +SFWC FRR ++ V  RLL+L
Sbjct: 617 MSFWCRFRRAFVTVTHRLLLL 637


>AF112299-1|AAD31593.2|  911|Homo sapiens integral inner nuclear
           membrane protein MAN1 protein.
          Length = 911

 Score = 29.9 bits (64), Expect = 7.5
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = +3

Query: 492 ISFWCVFRRYYLEVYKRLLVL 554
           +SFWC FRR ++ V  RLL+L
Sbjct: 618 MSFWCRFRRAFVTVTHRLLLL 638


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,546,310
Number of Sequences: 237096
Number of extensions: 1668003
Number of successful extensions: 3226
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3037
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3226
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6579110070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)