Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13h23
(618 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 282 2e-77
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 126 3e-30
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 120 1e-28
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 71 1e-13
SPBP4H10.04 |ppb1||calcineurin catalytic subunit Ppb1|Schizosacc... 29 0.54
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 27 1.6
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos... 27 2.2
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce... 27 2.9
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc... 26 3.8
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos... 26 3.8
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 26 3.8
SPAC140.03 |arb1||argonaute binding protein 1|Schizosaccharomyce... 26 3.8
SPBC19C7.12c |||alpha-1,2-mannosyltransferase|Schizosaccharomyce... 26 5.0
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 26 5.0
SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces pomb... 26 5.0
SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces... 26 5.0
SPCC594.06c |||SNARE Vam7 |Schizosaccharomyces pombe|chr 3|||Manual 26 5.0
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 282 bits (692), Expect = 2e-77
Identities = 126/163 (77%), Positives = 148/163 (90%)
Frame = -1
Query: 603 FMPGFAPLTSRGSQQYRALSVPELTQQMFDAKNMMAACDPRHGRYLTVAAVFRGRMSMKE 424
FM GFAPL + GS ++A+SVPELTQQMFDA NMM A DPRHGRYLTVAA+FRG++SMKE
Sbjct: 266 FMVGFAPLAAIGSSSFQAVSVPELTQQMFDANNMMVAADPRHGRYLTVAALFRGKVSMKE 325
Query: 423 VDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNTTAIQELFKRISEQF 244
VDEQ+ ++Q KNS+YFVEWIP+NV AVC +PP+ LKMSATFIGN+T+IQE+F+R+ +QF
Sbjct: 326 VDEQIRSVQTKNSAYFVEWIPDNVLKAVCSVPPKDLKMSATFIGNSTSIQEIFRRLGDQF 385
Query: 243 TAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDA 115
+AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ+A
Sbjct: 386 SAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQEA 428
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 126 bits (304), Expect = 3e-30
Identities = 57/163 (34%), Positives = 93/163 (57%), Gaps = 8/163 (4%)
Frame = -1
Query: 591 FAPLTSRGSQQYRALSVPELTQQMFDAKNMMAACDPRHGRYLTVAAVFRGRMSMKEVDEQ 412
+AP+ S + + SV E+T Q F+ N M CDPR GRY+ ++RG + ++V
Sbjct: 272 YAPIVSAAKAFHESNSVQEITNQCFEPYNQMVKCDPRAGRYMATCLLYRGDVIPRDVQAA 331
Query: 411 MLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMS--------ATFIGNTTAIQELFKRI 256
+ I+ K + FV+W P K +CD PP+ ++ S + NTT+I E + R+
Sbjct: 332 VTTIKAKRTIQFVDWCPTGFKIGICDRPPQHIEGSEIAKVDRAVCMLSNTTSIAEAWSRL 391
Query: 255 SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 127
+F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 392 DHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEE 434
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 120 bits (290), Expect = 1e-28
Identities = 53/163 (32%), Positives = 93/163 (57%), Gaps = 8/163 (4%)
Frame = -1
Query: 591 FAPLTSRGSQQYRALSVPELTQQMFDAKNMMAACDPRHGRYLTVAAVFRGRMSMKEVDEQ 412
++P+ S + + SV E+T Q F+ N M CDPR GRY+ ++RG + ++V
Sbjct: 276 YSPIVSAAKAFHESNSVQEITNQCFEPYNQMVKCDPRTGRYMATCLLYRGDVIPRDVQAA 335
Query: 411 MLNIQNKNSSYFVEWIPNNVKTAVCDIPPR--------GLKMSATFIGNTTAIQELFKRI 256
+ +I+++ + FV+W P K +C PP+ + + + NTT+I E + R+
Sbjct: 336 VTSIKSRRTIQFVDWCPTGFKIGICYEPPQHVPGSGIAKVNRAVCMLSNTTSIAEAWSRL 395
Query: 255 SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 127
+F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 396 DHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEE 438
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 70.9 bits (166), Expect = 1e-13
Identities = 40/171 (23%), Positives = 91/171 (53%), Gaps = 10/171 (5%)
Frame = -1
Query: 600 MPGFAPLTSRGSQQYRAL---SVPELTQQMFDAKNMMAACDP-RHGRYLTVAAVFRGRMS 433
+ + P T++ ++ +A+ +V ++ +++ KN M + +P + ++++ + +G
Sbjct: 270 LTSYTPFTNQQVEEAKAIRKTTVLDVMRRLLLPKNQMVSVNPSKKSCFISILDIIQGEAD 329
Query: 432 MKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPP---RGLKMSATFIGNTTAIQELFK 262
+V + +L I+ + + F+ W P +++ A+ P ++S + N T+I LFK
Sbjct: 330 PADVHKSLLRIRERRYASFIPWGPASIQVALSKKSPYIKTNHRVSGLMLANHTSIASLFK 389
Query: 261 RISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMN---DLVSEYQQYQD 118
R +Q+ + +R AFL Y E + E + E +S+ + DL++EY+ +D
Sbjct: 390 RTLDQYDRLRKRNAFLEQYKKEAIFEDDLNEFDSSRDVVADLINEYEACED 440
>SPBP4H10.04 |ppb1||calcineurin catalytic subunit
Ppb1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 554
Score = 29.1 bits (62), Expect = 0.54
Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Frame = -1
Query: 453 VFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIG--NTTA 280
V+ + ++ + + ++NI+ N S W+PN + +P G K+S I N +
Sbjct: 343 VYNNKAAVLKYENNVMNIRQFNCSPHPYWLPNFMDVFTWSLPFVGEKVSEMLISMLNICS 402
Query: 279 IQELFK 262
+EL++
Sbjct: 403 KEELYE 408
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 27.5 bits (58), Expect = 1.6
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +1
Query: 259 SFKQLLDSCGVSDEGGRHFESTRWNVAHGRLDVIGNPFHEVAAIFV 396
+FK++ C V DE R + + + L+++GNP H F+
Sbjct: 265 NFKKI--KCLVLDEADRLLQKSHFEELSKLLEILGNPMHTQRQTFI 308
>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 27.1 bits (57), Expect = 2.2
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -1
Query: 291 NTTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDE 184
N++ IQ L K I+ T +R ++ Y+G G+DE
Sbjct: 193 NSSEIQALEKSINTFTTYQYRAPEMINLYSGLGIDE 228
>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1242
Score = 26.6 bits (56), Expect = 2.9
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +1
Query: 76 LYLFIKFPFIISRGVLILLVLRNQIVHVRFSLRELHFIHT 195
LY+ I F I +RG L L +N ++ + F LR ++F T
Sbjct: 1075 LYVAIPFRTIFNRGTLALDAFQNWVIGL-FMLRMIYFTVT 1113
>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1958
Score = 26.2 bits (55), Expect = 3.8
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = -1
Query: 297 IGNTTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ 121
+ N + L+K + E+F+ +F RK L WY G+ E + N+N SE + Q
Sbjct: 1703 LNNPHLLFTLYKLL-ERFSLIFLRKCALLWYCRYGVS----FETQPNLNFQNSELSRLQ 1756
>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 647
Score = 26.2 bits (55), Expect = 3.8
Identities = 18/73 (24%), Positives = 35/73 (47%)
Frame = -2
Query: 302 PSSETPQLSKSCLKEFLNNLQPCSDEKLSCTGTRGRVWMKWSSRRLNRT*TIWFRSTSSI 123
PSS+ ++ K L F+ N+ ++ T +VW+ SS L+ T W +S++
Sbjct: 562 PSSDCSKILKCLLDGFVRNVAHLQNDGSYKTIGGKQVWLD-SSSVLHEKKTPWIMYSSAV 620
Query: 122 KTPRLMMKGNLMK 84
++ + N+ K
Sbjct: 621 ESETQIFVKNISK 633
>SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1462
Score = 26.2 bits (55), Expect = 3.8
Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Frame = +1
Query: 205 VPVQESFSSEHGCKL---FRNSFKQLLDSCGVSDEGGRHFESTRWNVAH 342
+P +S H +L F K ++ S+E HF+ TRW + +
Sbjct: 1216 LPFDKSILDNHSAELNDAFNLFLKAAVEYKVDSNESSEHFQDTRWKIIY 1264
>SPAC140.03 |arb1||argonaute binding protein 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 399
Score = 26.2 bits (55), Expect = 3.8
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = -1
Query: 474 RYLTVAAVFRGRMSMKEVDEQMLNIQNKN--SSYFVEWIPNNVK 349
RYLT V + +++K V + +LN N++ + F+ W P K
Sbjct: 297 RYLTGKVVEQEYLTVKLVSKTLLNFSNQSLCKAVFIVWDPPGSK 340
>SPBC19C7.12c |||alpha-1,2-mannosyltransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 390
Score = 25.8 bits (54), Expect = 5.0
Identities = 12/39 (30%), Positives = 17/39 (43%)
Frame = -1
Query: 474 RYLTVAAVFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPN 358
+Y+ +VF G + NI N S EW+PN
Sbjct: 29 QYIPTISVFEGSLIDNRDTLSYFNISNLEPSERSEWLPN 67
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 25.8 bits (54), Expect = 5.0
Identities = 11/46 (23%), Positives = 21/46 (45%)
Frame = +1
Query: 388 IFVLYVEHLFVHFLHRHPSAENGSDGQISTMARVTGSHHVLGIKHL 525
+F+ + + LH H S+ +D I + V GS G++ +
Sbjct: 403 VFIEFNSDSGITSLHLHASSNTNADNIIRALGDVAGSARAAGLREI 448
>SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 394
Score = 25.8 bits (54), Expect = 5.0
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -2
Query: 320 DSKCLPPSSETPQLSKSCLKEFLNNLQPCSDE 225
D +CLPPS ET + +KE N ++ S E
Sbjct: 357 DMQCLPPSYETMGPCEKEMKEETNEVEIASIE 388
>SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 224
Score = 25.8 bits (54), Expect = 5.0
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = +3
Query: 357 YWESIPRSSCYFCSV 401
YW+SIP+ C +C +
Sbjct: 4 YWKSIPKYYCKYCQI 18
>SPCC594.06c |||SNARE Vam7 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 341
Score = 25.8 bits (54), Expect = 5.0
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = -2
Query: 392 KIAATSWNGFPITSRRPCATFHLVDSKCLPPSSETPQLSKSCLKEFLNNLQPCSDE 225
K+ + SW +T+ + + L + SETP + +K+FLN DE
Sbjct: 62 KLPSKSWVSSTVTNEKLRESRRLALQAYVQCLSETPWIKMPVVKKFLNIKDESEDE 117
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,557,529
Number of Sequences: 5004
Number of extensions: 52374
Number of successful extensions: 166
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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