Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13h20
         (791 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC000892-1|AAH00892.1|  248|Homo sapiens C18orf55 protein protein.     31   6.3  
BC070231-1|AAH70231.1|  139|Homo sapiens TMEM107 protein protein.      30   8.3  

>BC000892-1|AAH00892.1|  248|Homo sapiens C18orf55 protein protein.
          Length = 248

 Score = 30.7 bits (66), Expect = 6.3
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -3

Query: 405 HVLLDKACAKSIETANCGIQIQKST 331
           +++L+KAC K+  +  CG+Q QK T
Sbjct: 27  YIVLNKACLKTEPSLRCGLQYQKKT 51


>BC070231-1|AAH70231.1|  139|Homo sapiens TMEM107 protein protein.
          Length = 139

 Score = 30.3 bits (65), Expect = 8.3
 Identities = 25/75 (33%), Positives = 33/75 (44%)
 Frame = +2

Query: 155 CRHKAHLFVTL*L**FLNGLLWTVDSHKHFIDSRL*LFCGRHCCAH*ALIFFLFELINSV 334
           CR  A L VTL L  F   L   +     F  ++  +  G HC A  AL FF+FE     
Sbjct: 57  CRLVAALSVTLGL--FAVELAGFLSGVSMFNSTQSLISIGAHCSASVALSFFIFERWECT 114

Query: 335 DFCI*IPQLAVSILF 379
            +C  +P +    LF
Sbjct: 115 TYCA-LPAVTEMALF 128


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,821,335
Number of Sequences: 237096
Number of extensions: 2130279
Number of successful extensions: 4234
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4233
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9701808132
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)