Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13h20
         (791 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   1.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   1.4  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    23   4.3  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   9.9  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             21   9.9  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 56   STDTNLV*PQYTLHYKPTLKKIW 124
            +T +N +   Y LHY+P L  +W
Sbjct: 1137 NTHSNGIIQGYKLHYEPILADMW 1159


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 56   STDTNLV*PQYTLHYKPTLKKIW 124
            +T +N +   Y LHY+P L  +W
Sbjct: 1133 NTHSNGIIQGYKLHYEPILADMW 1155


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 13/55 (23%), Positives = 28/55 (50%)
 Frame = -1

Query: 320 IQTKRR*ELNVHNNVSHKTIITGNR*SAYGNRQSIINHSEITTVTM*QKDGLYVG 156
           ++ +R  E  + +++S+KTI   N  + Y N++   N + I  + +     +Y G
Sbjct: 293 MERERSKEPKIISSLSNKTIHNNNNYNNYNNKKLYYNINYIEQIPVPVPVPIYYG 347


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +1

Query: 487 SSLANQRHTLVITPQRTSYKGIN 555
           ++LA+Q    +++PQ    KGIN
Sbjct: 208 ATLADQIKNGIVSPQEERPKGIN 230


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +1

Query: 487 SSLANQRHTLVITPQRTSYKGIN 555
           ++LA+Q    +++PQ    KGIN
Sbjct: 203 ATLADQIKNGIVSPQEERPKGIN 225


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,565
Number of Sequences: 438
Number of extensions: 4237
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25003662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)