Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13h18
         (690 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces...    31   0.16 
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos...    30   0.36 
SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger protein|Schiz...    27   2.6  
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    26   5.9  
SPBC25H2.15 |||programmed cell death protein homolog|Schizosacch...    25   7.8  

>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 179

 Score = 31.1 bits (67), Expect = 0.16
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
 Frame = +1

Query: 541 RPVLQCFKCYKFGHGSGACKATQVCSICS-GNHFYRECSTPNIFK-CSNC 684
           RP  +C+ C + GH +  C    +C  C+   H   EC+ P   K C  C
Sbjct: 14  RPGPRCYNCGENGHQARECTKGSICYNCNQTGHKASECTEPQQEKTCYAC 63



 Score = 28.3 bits (60), Expect = 1.1
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
 Frame = +1

Query: 550 LQCFKCYKFGHGSGACKAT---QVCSICS-GNHFYRECSTPNI 666
           ++C+ C K GH S  C+     Q+C  C+   H    C++P I
Sbjct: 135 VKCYSCGKIGHRSFECQQASDGQLCYKCNQPGHIAVNCTSPVI 177



 Score = 25.4 bits (53), Expect = 7.8
 Identities = 15/53 (28%), Positives = 22/53 (41%)
 Frame = +1

Query: 523 PVSDYIRPVLQCFKCYKFGHGSGACKATQVCSICSGNHFYRECSTPNIFKCSN 681
           P S   R   +C+KC + GH +  C+        SG  F    S  N + C +
Sbjct: 74  PSSPNPRQGAECYKCGRVGHIARDCRTN---GQQSGGRFGGHRSNMNCYACGS 123


>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
           Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = +2

Query: 119 MGKRRMKSSEYDESRKIKMTFIKNKRGLFKDHHAL 223
           MG++++  +   + R   +TF+K K+GL+K  + L
Sbjct: 1   MGRKKISIAPITDDRSRSVTFVKRKQGLYKKAYEL 35


>SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 218

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 9/46 (19%)
 Frame = +1

Query: 553 QCFKCYKFGHGSGACKATQ--------VCSICSG-NHFYRECSTPN 663
           +CF C++ GH SG C+            C  CS  +H  ++C   N
Sbjct: 125 KCFICHENGHLSGQCEQNPKGLYPKGGCCKFCSSVHHLAKDCDQVN 170


>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1096

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -2

Query: 416 NLFTPSIVHEAFKFTKRDSS 357
           N+F+P ++H   KF K DS+
Sbjct: 334 NIFSPHLIHAGTKFLKIDST 353


>SPBC25H2.15 |||programmed cell death protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 396

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/17 (58%), Positives = 11/17 (64%), Gaps = 1/17 (5%)
 Frame = +1

Query: 637 FYRECS-TPNIFKCSNC 684
           F+  CS  PNI KC NC
Sbjct: 38  FFDGCSLNPNIIKCGNC 54


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,761,729
Number of Sequences: 5004
Number of extensions: 56611
Number of successful extensions: 147
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)