Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13h18
         (690 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC025928-1|AAH25928.2|  221|Homo sapiens retinitis pigmentosa 9 ...    34   0.42 
BC107584-1|AAI07585.1|  239|Homo sapiens ZCCHC3 protein protein.       31   2.9  
BC069238-1|AAH69238.1|  403|Homo sapiens zinc finger, CCHC domai...    31   2.9  
AL034548-4|CAB81631.1|  404|Homo sapiens zinc finger, CCHC domai...    31   2.9  

>BC025928-1|AAH25928.2|  221|Homo sapiens retinitis pigmentosa 9
           (autosomal dominant) protein.
          Length = 221

 Score = 34.3 bits (75), Expect = 0.42
 Identities = 11/32 (34%), Positives = 22/32 (68%)
 Frame = +1

Query: 496 HVTYEHIWMPVSDYIRPVLQCFKCYKFGHGSG 591
           H   + +WMP+   ++ V+QC++C ++GH +G
Sbjct: 86  HAPTKGLWMPLGKEVK-VMQCWRCKRYGHRTG 116


>BC107584-1|AAI07585.1|  239|Homo sapiens ZCCHC3 protein protein.
          Length = 239

 Score = 31.5 bits (68), Expect = 2.9
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +1

Query: 553 QCFKCYKFGHGSGACKATQVCSIC-SGNHFYREC 651
           +CF+C + GH S  C+   VC++C    H + +C
Sbjct: 188 RCFRCGEEGHLSPYCRKGIVCNLCGKRGHAFAQC 221


>BC069238-1|AAH69238.1|  403|Homo sapiens zinc finger, CCHC domain
           containing 3 protein.
          Length = 403

 Score = 31.5 bits (68), Expect = 2.9
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +1

Query: 553 QCFKCYKFGHGSGACKATQVCSIC-SGNHFYREC 651
           +CF+C + GH S  C+   VC++C    H + +C
Sbjct: 352 RCFRCGEEGHLSPYCRKGIVCNLCGKRGHAFAQC 385


>AL034548-4|CAB81631.1|  404|Homo sapiens zinc finger, CCHC domain
           containing 3 protein.
          Length = 404

 Score = 31.5 bits (68), Expect = 2.9
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +1

Query: 553 QCFKCYKFGHGSGACKATQVCSIC-SGNHFYREC 651
           +CF+C + GH S  C+   VC++C    H + +C
Sbjct: 353 RCFRCGEEGHLSPYCRKGIVCNLCGKRGHAFAQC 386


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,353,546
Number of Sequences: 237096
Number of extensions: 1893502
Number of successful extensions: 3714
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3714
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7895240574
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)