Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13h17
         (816 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H4.06 |gln1||glutamate-ammonia ligase Gln1|Schizosaccharom...   239   4e-64
SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomy...    26   5.6  
SPAC9G1.05 |||actin cortical patch component Aip1 |Schizosacchar...    25   9.7  

>SPAC23H4.06 |gln1||glutamate-ammonia ligase
           Gln1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 359

 Score =  239 bits (584), Expect = 4e-64
 Identities = 117/238 (49%), Positives = 149/238 (62%), Gaps = 1/238 (0%)
 Frame = -3

Query: 763 KFCDQEPWFGIEQEYTMFDRDHWPLGWPKPRGYPDQDSKNSYCGVGE-HVAGREIAECHA 587
           K  D+E WFGIEQEYTM D    P GWPK  G+P       YCGVG   V  R+I E H 
Sbjct: 124 KHADKETWFGIEQEYTMLDYYDRPFGWPKG-GFPGPQGP-FYCGVGTGRVFARDIVEAHY 181

Query: 586 RACIYSGMDYDGSNAEVMNGSWEFQVGPTLGIKAADDIWIGRYLLNRIAEHFDVIISFHP 407
           +AC+Y+G++  G NAEVM   WE+QVGP  GI+  D +W+ R+LL+RIAE F V ISFHP
Sbjct: 182 KACLYAGINISGINAEVMPSQWEYQVGPCAGIEMGDQLWMSRFLLHRIAEDFGVKISFHP 241

Query: 406 KPMGDGHAGIGCHHNFSTKKMRADQGVTEIKRICKILCDQHEKIIKSYDLKDGEDNKKRL 227
           KP+     G GCH N STK  RA+ G+  I+   +    +H++ I  Y    G+DN  RL
Sbjct: 242 KPILGDWNGAGCHTNVSTKDTRAEGGIKAIESYLEKFAKRHKEHIAVY----GDDNDLRL 297

Query: 226 VGKFETSSYDSCRVGISDRSASIRIQKKVISEGKGYFEDRRPAGNCDPYMVCGVIAKT 53
            G+ ET S D    G++DR AS+RI + V   G GYFEDRRPA + DPY+V G+I +T
Sbjct: 298 TGRHETGSIDKFTYGVADRGASVRIPRSVAMNGCGYFEDRRPASSIDPYLVTGIITET 355


>SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 510

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +3

Query: 606 SLPATCSPTPQ*EFLESWSGYPRGFGHPKGQ 698
           S P    P+    F+ES +G P GF  P  Q
Sbjct: 362 SFPLPTMPSEAKGFIESGAGQPLGFNAPSNQ 392


>SPAC9G1.05 |||actin cortical patch component Aip1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 595

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -3

Query: 559 YDGSNAEVMNGSWEFQVGPTLGI 491
           YD ++ EV+   W F  G  LG+
Sbjct: 506 YDANSREVITSRWAFHTGRILGM 528


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,700,780
Number of Sequences: 5004
Number of extensions: 84155
Number of successful extensions: 207
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)