Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13h09
         (169 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    22   0.79 
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    18   9.7  

>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.8 bits (44), Expect = 0.79
 Identities = 10/44 (22%), Positives = 20/44 (45%)
 Frame = -2

Query: 150 ISNIGIILNVLKKTDHCILVRKCHHFSSRHGKRNMK*FYKKYKD 19
           +S   +++    K D   +     +F  R+G  N+  F  ++KD
Sbjct: 194 LSGYALVVYSWAKNDSWRITHNFFYFDPRYGNYNINGFNFQWKD 237


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 18.2 bits (35), Expect = 9.7
 Identities = 6/19 (31%), Positives = 10/19 (52%)
 Frame = -2

Query: 81  HHFSSRHGKRNMK*FYKKY 25
           HHF  R+   ++  + K Y
Sbjct: 432 HHFQCRYPNASVTPYNKNY 450


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 41,205
Number of Sequences: 438
Number of extensions: 508
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of database: 146,343
effective HSP length: 35
effective length of database: 131,013
effective search space used:  2620260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)