Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13h08
(759 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80836-10|AAB37890.2| 306|Caenorhabditis elegans Hypothetical p... 79 3e-15
X76114-1|CAA53720.1| 290|Caenorhabditis elegans Oxoglutarate/ma... 44 2e-04
U23525-8|AAC46570.1| 290|Caenorhabditis elegans Hypothetical pr... 44 2e-04
AF003384-5|AAB54239.2| 324|Caenorhabditis elegans Uncoupling pr... 39 0.004
Z81577-1|CAB04651.3| 289|Caenorhabditis elegans Hypothetical pr... 35 0.072
Z79755-2|CAB02107.1| 294|Caenorhabditis elegans Hypothetical pr... 33 0.22
Z49070-1|CAA88869.1| 384|Caenorhabditis elegans Hypothetical pr... 33 0.29
X76116-1|CAA53722.1| 384|Caenorhabditis elegans carrier protein... 33 0.29
Z46787-1|CAA86739.2| 360|Caenorhabditis elegans Hypothetical pr... 31 0.67
Z75955-5|CAB00119.2| 285|Caenorhabditis elegans Hypothetical pr... 30 2.1
Z49068-10|CAA88858.1| 296|Caenorhabditis elegans Hypothetical p... 30 2.1
Z81496-11|CAB04069.2| 448|Caenorhabditis elegans Hypothetical p... 29 3.6
U00052-8|AAK21421.2| 707|Caenorhabditis elegans Hypothetical pr... 29 3.6
AY204204-1|AAO39205.1| 448|Caenorhabditis elegans nuclear recep... 29 3.6
Z68160-3|CAA92291.1| 269|Caenorhabditis elegans Hypothetical pr... 29 4.7
U64842-4|AAB37086.2| 306|Caenorhabditis elegans Hypothetical pr... 29 4.7
CU457741-10|CAM36351.1| 313|Caenorhabditis elegans Hypothetical... 29 4.7
AF099914-3|AAC68758.2| 265|Caenorhabditis elegans Hypothetical ... 29 4.7
AF003141-4|AAK21485.1| 300|Caenorhabditis elegans Hypothetical ... 28 6.3
Z71259-11|CAI46575.1| 370|Caenorhabditis elegans Hypothetical p... 28 8.3
Z71259-10|CAA95794.4| 373|Caenorhabditis elegans Hypothetical p... 28 8.3
>U80836-10|AAB37890.2| 306|Caenorhabditis elegans Hypothetical
protein B0432.4 protein.
Length = 306
Score = 79.4 bits (187), Expect = 3e-15
Identities = 40/104 (38%), Positives = 55/104 (52%), Gaps = 6/104 (5%)
Frame = -1
Query: 639 EAMQRALQENKVAKGLELHFYTSMISSFIAAVISLPIDHIKTRYQV------RSDCVTQK 478
+A Q L KV G+ HF SMIS + S+P+D KTR Q + +
Sbjct: 190 QAKQALLASGKVQDGIFCHFLASMISGLATTIASMPVDIAKTRIQSMKVIDGKPEYKNAF 249
Query: 477 EILADTRRNRGIFGLWRGFTPYYLRMAFHTFITFYLLEQFFEMY 346
++ +N GIF LW+GFTPYY+R+ HT +TF +LEQ Y
Sbjct: 250 DVWGKVIKNEGIFALWKGFTPYYMRLGPHTVLTFIILEQMNAAY 293
Score = 40.7 bits (91), Expect = 0.001
Identities = 17/44 (38%), Positives = 29/44 (65%)
Frame = -3
Query: 757 YTGTFDAICKIIRYESISGLWRGGVLTSGRSLIVTAAQIGSYAK 626
YTG +A+ +I + E + LWRG T R+++V AAQ+ +Y++
Sbjct: 147 YTGVVNALTRITKEEGVLTLWRGCTPTVLRAMVVNAAQLATYSQ 190
>X76114-1|CAA53720.1| 290|Caenorhabditis elegans
Oxoglutarate/malate carrier protein protein.
Length = 290
Score = 43.6 bits (98), Expect = 2e-04
Identities = 30/96 (31%), Positives = 53/96 (55%), Gaps = 3/96 (3%)
Frame = -1
Query: 639 EAMQRALQENKVAK-GLELHFYTSMISSFIAAVISLPIDHIKTRYQVRSDCVTQKEILAD 463
+ +++ L + VA+ L+ HF +S+ ++ +A V++ P+D +KTR + + K IL
Sbjct: 183 DQIKQTLISSGVAEDNLQTHFASSISAASVATVMTQPLDVMKTR-MMNAAPGEFKGILDC 241
Query: 462 TR--RNRGIFGLWRGFTPYYLRMAFHTFITFYLLEQ 361
G G ++GF P + R+A HT +TF EQ
Sbjct: 242 FMFTAKLGPMGFFKGFIPAWARLAPHTVLTFIFFEQ 277
>U23525-8|AAC46570.1| 290|Caenorhabditis elegans Hypothetical
protein K11G12.5 protein.
Length = 290
Score = 43.6 bits (98), Expect = 2e-04
Identities = 30/96 (31%), Positives = 53/96 (55%), Gaps = 3/96 (3%)
Frame = -1
Query: 639 EAMQRALQENKVAK-GLELHFYTSMISSFIAAVISLPIDHIKTRYQVRSDCVTQKEILAD 463
+ +++ L + VA+ L+ HF +S+ ++ +A V++ P+D +KTR + + K IL
Sbjct: 183 DQIKQTLISSGVAEDNLQTHFASSISAASVATVMTQPLDVMKTR-MMNAAPGEFKGILDC 241
Query: 462 TR--RNRGIFGLWRGFTPYYLRMAFHTFITFYLLEQ 361
G G ++GF P + R+A HT +TF EQ
Sbjct: 242 FMFTAKLGPMGFFKGFIPAWARLAPHTVLTFIFFEQ 277
>AF003384-5|AAB54239.2| 324|Caenorhabditis elegans Uncoupling
protein (mitochondrialsubstrate carrier) protein 4
protein.
Length = 324
Score = 38.7 bits (86), Expect = 0.004
Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
Frame = -1
Query: 600 KGLELHFYTSMISSFIAAVISLPIDHIKTRYQVRSDCVTQ---KEILADTRRNRGIFGLW 430
K + ++ S ++ +A ++ P+D KTR Q+ + T+ ++ D R G LW
Sbjct: 21 KKIATKYFLSCTAALVAETVTYPLDITKTRLQIARNKFTKGGMVQVTYDIIRREGAMALW 80
Query: 429 RGFTPYYLRMAFHTFITFYLLEQ 361
G P R +T I EQ
Sbjct: 81 TGVAPAITRHYIYTGIRMGAYEQ 103
Score = 37.1 bits (82), Expect = 0.014
Identities = 30/100 (30%), Positives = 48/100 (48%), Gaps = 17/100 (17%)
Frame = -1
Query: 585 HFYTSMISSFIAAVISLPIDHIKTRY--QVRSDCVTQKEILADTR--------------- 457
H S + AA++SLP D +KTR Q+R + + +T
Sbjct: 223 HAVASACAGLAAAIVSLPSDVVKTRMMDQIRHELDAKMMHKKNTHVDLYKGVVDCYIKII 282
Query: 456 RNRGIFGLWRGFTPYYLRMAFHTFITFYLLEQFFEMYQKW 337
+N G F L++GF P Y+RMA + +TF++ +E +KW
Sbjct: 283 KNEGFFSLYKGFLPSYIRMAPWS-LTFWV---SYEEIRKW 318
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = -3
Query: 757 YTGTFDAICKIIRYESISGLWRGGVLTSGRSLIVTAAQIGSY 632
YTG D + R + GLW G + R+ ++ A I +Y
Sbjct: 162 YTGATDCFRSLYRTQGFFGLWIGWMPNCQRAALLNMADIATY 203
>Z81577-1|CAB04651.3| 289|Caenorhabditis elegans Hypothetical
protein R11.1 protein.
Length = 289
Score = 34.7 bits (76), Expect = 0.072
Identities = 17/69 (24%), Positives = 30/69 (43%)
Frame = -1
Query: 564 SSFIAAVISLPIDHIKTRYQVRSDCVTQKEILADTRRNRGIFGLWRGFTPYYLRMAFHTF 385
+ + + P+D +KTR Q+ + + T +N GI G ++G P L
Sbjct: 17 AGLVEVCLMYPLDVVKTRLQLGQQDKGMMDCVVKTLKNEGIGGFYKGILPPILAETPKRA 76
Query: 384 ITFYLLEQF 358
F+ EQ+
Sbjct: 77 TKFFTFEQY 85
>Z79755-2|CAB02107.1| 294|Caenorhabditis elegans Hypothetical
protein F43G9.3 protein.
Length = 294
Score = 33.1 bits (72), Expect = 0.22
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Frame = -1
Query: 582 FYTSMISSFIAAVISLPIDHIKTRYQVRSDCV--TQKEILADTRRNRGIFGLWRGFTPYY 409
+ T +++ A +I+ P+D K R V S + K + T + GI L+RG P
Sbjct: 114 YITGSLAATTATMITYPLDTAKARLSVSSKLQYSSLKHVFVKTYKEGGIQLLYRGIYPTI 173
Query: 408 LRMAFHTFITFYLLEQFFEMYQ 343
L + + +F+ E MY+
Sbjct: 174 LGVIPYAGSSFFTYETLKIMYR 195
Score = 29.5 bits (63), Expect = 2.7
Identities = 24/102 (23%), Positives = 41/102 (40%), Gaps = 4/102 (3%)
Frame = -1
Query: 615 ENKVAKGLELHFYTSMISSFIAAVISLPIDHIKTRYQVRS----DCVTQKEILADTRRNR 448
E K + L I+ +A P+D K +QV S + + + T R
Sbjct: 7 EGKQRPSVVLSLSAGAIAGALAKTTIAPLDRTKIYFQVSSTRGYSFRSAIKFIKLTYREN 66
Query: 447 GIFGLWRGFTPYYLRMAFHTFITFYLLEQFFEMYQKWEEHER 322
G F L+RG + R+ + + F EQ+ ++ + E R
Sbjct: 67 GFFALYRGNSATMARVVPYASMQFAAFEQYKKLLKVDENGSR 108
>Z49070-1|CAA88869.1| 384|Caenorhabditis elegans Hypothetical
protein T09F3.2 protein.
Length = 384
Score = 32.7 bits (71), Expect = 0.29
Identities = 20/77 (25%), Positives = 36/77 (46%)
Frame = -1
Query: 588 LHFYTSMISSFIAAVISLPIDHIKTRYQVRSDCVTQKEILADTRRNRGIFGLWRGFTPYY 409
+H ++ + F+AA PI +KTR Q+ + +++ G G ++G T Y
Sbjct: 206 VHMVSAGSAGFVAASAVNPIWLVKTRLQLHQGHIGIWQMIKRVYHREGFKGFYKGVTASY 265
Query: 408 LRMAFHTFITFYLLEQF 358
++ T I F + E F
Sbjct: 266 AGVS-ETMIQFCIYEYF 281
>X76116-1|CAA53722.1| 384|Caenorhabditis elegans carrier protein
(c2) protein.
Length = 384
Score = 32.7 bits (71), Expect = 0.29
Identities = 20/77 (25%), Positives = 36/77 (46%)
Frame = -1
Query: 588 LHFYTSMISSFIAAVISLPIDHIKTRYQVRSDCVTQKEILADTRRNRGIFGLWRGFTPYY 409
+H ++ + F+AA PI +KTR Q+ + +++ G G ++G T Y
Sbjct: 206 VHMVSAGSAGFVAASAVNPIWLVKTRLQLHQGHIGIWQMIKRVYHREGFKGFYKGVTASY 265
Query: 408 LRMAFHTFITFYLLEQF 358
++ T I F + E F
Sbjct: 266 AGVS-ETMIQFCIYEYF 281
>Z46787-1|CAA86739.2| 360|Caenorhabditis elegans Hypothetical
protein C16C10.1 protein.
Length = 360
Score = 31.5 bits (68), Expect = 0.67
Identities = 17/42 (40%), Positives = 21/42 (50%)
Frame = -3
Query: 757 YTGTFDAICKIIRYESISGLWRGGVLTSGRSLIVTAAQIGSY 632
+ GT DAI KI R+E I LW G T +L T +Y
Sbjct: 106 FRGTADAIVKIARHEGIRSLWSGLSPTMVMALPATVFYFTTY 147
Score = 29.5 bits (63), Expect = 2.7
Identities = 21/87 (24%), Positives = 39/87 (44%), Gaps = 6/87 (6%)
Frame = -1
Query: 582 FYTSMISSFIAAVISLPIDHIKTRYQVR----SDCVTQK--EILADTRRNRGIFGLWRGF 421
F + + +A++ + P D IKT Q+R D + + ++ D +RGI G
Sbjct: 272 FVSGAAAGVVASIFTHPFDVIKTNCQIRIGGSIDDMNKSITTVIKDMYHSRGISAFSSGL 331
Query: 420 TPYYLRMAFHTFITFYLLEQFFEMYQK 340
P ++++ I E F ++QK
Sbjct: 332 VPRLVKVSPSCAIMISFYEYFKFLFQK 358
>Z75955-5|CAB00119.2| 285|Caenorhabditis elegans Hypothetical
protein R07B7.10 protein.
Length = 285
Score = 29.9 bits (64), Expect = 2.1
Identities = 13/56 (23%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = -1
Query: 546 VISLPIDHIKTRYQVRSDCVTQKEILADTRRNRGIFGLWRG-FTPYYLRMAFHTFI 382
++ P+D +K R Q + + + T + ++GL++G F P+ A H+ +
Sbjct: 17 LVGHPLDTVKARLQTMNIYKGIVDCMVKTMKQESVYGLYKGMFVPFISTGALHSLL 72
>Z49068-10|CAA88858.1| 296|Caenorhabditis elegans Hypothetical
protein K01C8.7a protein.
Length = 296
Score = 29.9 bits (64), Expect = 2.1
Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
Frame = -1
Query: 573 SMISSFIAAVISLPIDHIKTRYQVRS-DCVTQKEILADTRRNRGIFGLWRGFTPYYLRMA 397
S S +A I+ P ++TR Q + D + T N GI GLW+G +R
Sbjct: 214 SSTSKVLATTITFPYQVLRTRMQDHNTDSRGVWKTTLKTIHNEGIGGLWKGCLIANVRQL 273
Query: 396 FHTFITFYLLE 364
+TF E
Sbjct: 274 PAAVVTFLTYE 284
>Z81496-11|CAB04069.2| 448|Caenorhabditis elegans Hypothetical
protein F09C6.9 protein.
Length = 448
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = -2
Query: 440 LVCGEDSHRTICGWLFTPSSLSICWSSFSRCTRNGKSTRENLDEACLD 297
LVCG +H G+ + +S + C + F R +G+S LD C D
Sbjct: 51 LVCGRSAH----GYHYNVASCNGCKTFFRRMCLSGRSFSCKLDRDCFD 94
>U00052-8|AAK21421.2| 707|Caenorhabditis elegans Hypothetical
protein K02F3.2 protein.
Length = 707
Score = 29.1 bits (62), Expect = 3.6
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 8/84 (9%)
Frame = -1
Query: 582 FYTSMISSFIAAVISLPIDHIKTRYQV--RSDCVTQKEILADTR---RNRGIFGLWRGFT 418
F ++ I+ AA + P D IKTR QV R+ T ++ R + G LW+G
Sbjct: 565 FASAFIAGVPAAGLVTPADVIKTRLQVAARAGQTTYNGVIDCARKLIKEEGPMSLWKGTA 624
Query: 417 PYYLRMAFH---TFITFYLLEQFF 355
R + T +T+ +L++ F
Sbjct: 625 ARVCRSSPQFAVTLLTYEVLQRLF 648
>AY204204-1|AAO39205.1| 448|Caenorhabditis elegans nuclear receptor
NHR-116 protein.
Length = 448
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = -2
Query: 440 LVCGEDSHRTICGWLFTPSSLSICWSSFSRCTRNGKSTRENLDEACLD 297
LVCG +H G+ + +S + C + F R +G+S LD C D
Sbjct: 51 LVCGRSAH----GYHYNVASCNGCKTFFRRMCLSGRSFSCKLDRDCFD 94
>Z68160-3|CAA92291.1| 269|Caenorhabditis elegans Hypothetical
protein D1046.3 protein.
Length = 269
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Frame = -1
Query: 567 ISSFIAAVISLPIDHIKTRYQVRSDCVTQ--KEILADTRRNRGIFGLWRGFTPYYLRMAF 394
++ FIAA ++ P+D KTR + + L + + G+ GL+ G P + ++
Sbjct: 190 VAGFIAAGLTTPLDVAKTRIMLTKNGPAPGILSTLKEVYTSNGVRGLYSGVVPRVMWISG 249
Query: 393 HTFITF 376
F+ F
Sbjct: 250 GGFVFF 255
>U64842-4|AAB37086.2| 306|Caenorhabditis elegans Hypothetical
protein F25B4.7 protein.
Length = 306
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = -3
Query: 757 YTGTFDAICKIIRYESISGLWRGGVLTSGRSLIVTAAQIGSY 632
+TG FD KII+ + + GL++G + + +I A G +
Sbjct: 164 FTGMFDCAKKIIKSDGVPGLYKGLIPSLQYMIIYRGAYYGLF 205
>CU457741-10|CAM36351.1| 313|Caenorhabditis elegans Hypothetical
protein C42C1.10 protein.
Length = 313
Score = 28.7 bits (61), Expect = 4.7
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Frame = -1
Query: 582 FYTSMISSFIAAVISLPIDHIKTRY--QVRSDCVTQKEILADTR--RNRGIFGLWRGFTP 415
F +S +A ++P+D I+TR Q V + A GI G +RG+ P
Sbjct: 123 FACGALSGCLAMTAAMPLDVIRTRLVAQKAGHAVYTGTMHAVKHIWEKEGIAGYFRGWVP 182
Query: 414 YYLRMAFHTFITFYLLEQFFEMY 346
+++A T + F L F +++
Sbjct: 183 SVVQIAPFTGMQFALYNCFMDLW 205
>AF099914-3|AAC68758.2| 265|Caenorhabditis elegans Hypothetical
protein C40A11.4 protein.
Length = 265
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = -1
Query: 432 WRGFTPYYLRMAFHTFITFYLLEQFFEM-YQKWEE 331
WR F Y FHTF F +Q FEM KW++
Sbjct: 228 WR-FWLYSANRGFHTFDEFSRFKQLFEMRIMKWKD 261
>AF003141-4|AAK21485.1| 300|Caenorhabditis elegans Hypothetical
protein W02D3.6 protein.
Length = 300
Score = 28.3 bits (60), Expect = 6.3
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = -3
Query: 757 YTGTFDAICKIIRYESISGLWRGGV 683
Y T D + KI++ E I+ L++GG+
Sbjct: 253 YKNTLDCVRKIVKNEGITALYKGGL 277
>Z71259-11|CAI46575.1| 370|Caenorhabditis elegans Hypothetical
protein F13G3.7b protein.
Length = 370
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -3
Query: 757 YTGTFDAICKIIRYESISGLWRGGVLT 677
Y G DA KIIR E I L++G +T
Sbjct: 87 YNGMRDAFVKIIRQEGIGALYKGFWMT 113
>Z71259-10|CAA95794.4| 373|Caenorhabditis elegans Hypothetical
protein F13G3.7a protein.
Length = 373
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -3
Query: 757 YTGTFDAICKIIRYESISGLWRGGVLT 677
Y G DA KIIR E I L++G +T
Sbjct: 90 YNGMRDAFVKIIRQEGIGALYKGFWMT 116
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,144,976
Number of Sequences: 27780
Number of extensions: 352645
Number of successful extensions: 989
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 922
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 985
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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